* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘BayLum’ ... ** this is package ‘BayLum’ version ‘0.3.2’ ** package ‘BayLum’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘BayLum’ finding HTML links ... done AgeC14_Computation html Rd warning: AgeC14_Computation.Rd:86: missing link ‘rjags’ Rd warning: AgeC14_Computation.Rd:206: missing link ‘rjags’ AgeS html AgeS_Computation html Rd warning: AgeS_Computation.Rd:365: missing link ‘rjags’ Rd warning: AgeS_Computation.Rd:365: missing link ‘runjags’ Age_Computation html Rd warning: Age_Computation.Rd:75: missing link ‘jags.model’ Rd warning: Age_Computation.Rd:78: missing link ‘jags.model’ Rd warning: Age_Computation.Rd:80: missing link ‘jags.model’ Rd warning: Age_Computation.Rd:82: missing link ‘rjags’ Rd warning: Age_Computation.Rd:197: missing link ‘rjags’ Age_OSLC14 html Rd warning: Age_OSLC14.Rd:164: missing link ‘rjags’ Rd warning: Age_OSLC14.Rd:395: missing link ‘runjags’ BayLum-deprecated html BayLum-package html DATA1 html DATA2 html DATA3 html DATA_C14 html Generate_DataFile-deprecated html Rd warning: Generate_DataFile-deprecated.Rd:143: missing link ‘read_BIN2R’ Rd warning: Generate_DataFile-deprecated.Rd:143: missing link ‘Luminescence’ Rd warning: Generate_DataFile-deprecated.Rd:167: missing link ‘read_BIN2R’ Generate_DataFile_MG-deprecated html Rd warning: Generate_DataFile_MG-deprecated.Rd:178: missing link ‘read_BIN2R’ IntCal13 html IntCal20 html LT_RegenDose-deprecated html MCMCsample html Marine13 html Marine20 html ModelC14 html ModelOSL html ModelPrior html Model_Age html Rd warning: Model_Age.Rd:36: missing link ‘rjags’ Model_AgeC14 html Rd warning: Model_AgeC14.Rd:31: missing link ‘rjags’ Model_AgeS html Rd warning: Model_AgeS.Rd:35: missing link ‘rjags’ Model_Palaeodose html Rd warning: Model_Palaeodose.Rd:37: missing link ‘rjags’ Palaeodose_Computation html Rd warning: Palaeodose_Computation.Rd:64: missing link ‘jags.model’ Rd warning: Palaeodose_Computation.Rd:67: missing link ‘jags.model’ Rd warning: Palaeodose_Computation.Rd:69: missing link ‘jags.model’ Rd warning: Palaeodose_Computation.Rd:177: missing link ‘rjags’ SCMatrix html SC_Ordered html SHCal13 html SHCal20 html combine_DataFiles html create_DataFile html Rd warning: create_DataFile.Rd:35: missing link ‘RLum.Analysis-class’ create_FolderTemplates html create_ThetaMatrix html plot_Ages html plot_MCMC html Rd warning: plot_MCMC.Rd:78: missing link ‘rjags’ plot_RegDosePoints html plot_Scatterplots html Rd warning: plot_Scatterplots.Rd:109: missing link ‘rjags’ write_BayLumFiles html write_YAMLConfigFile html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BayLum)