* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘BayLum’ ...
** this is package ‘BayLum’ version ‘0.3.2’
** package ‘BayLum’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘BayLum’
    finding HTML links ... done
    AgeC14_Computation                      html  
Rd warning: AgeC14_Computation.Rd:86: missing link ‘rjags’
Rd warning: AgeC14_Computation.Rd:206: missing link ‘rjags’
    AgeS                                    html  
    AgeS_Computation                        html  
Rd warning: AgeS_Computation.Rd:365: missing link ‘rjags’
Rd warning: AgeS_Computation.Rd:365: missing link ‘runjags’
    Age_Computation                         html  
Rd warning: Age_Computation.Rd:75: missing link ‘jags.model’
Rd warning: Age_Computation.Rd:78: missing link ‘jags.model’
Rd warning: Age_Computation.Rd:80: missing link ‘jags.model’
Rd warning: Age_Computation.Rd:82: missing link ‘rjags’
Rd warning: Age_Computation.Rd:197: missing link ‘rjags’
    Age_OSLC14                              html  
Rd warning: Age_OSLC14.Rd:164: missing link ‘rjags’
Rd warning: Age_OSLC14.Rd:395: missing link ‘runjags’
    BayLum-deprecated                       html  
    BayLum-package                          html  
    DATA1                                   html  
    DATA2                                   html  
    DATA3                                   html  
    DATA_C14                                html  
    Generate_DataFile-deprecated            html  
Rd warning: Generate_DataFile-deprecated.Rd:143: missing link ‘read_BIN2R’
Rd warning: Generate_DataFile-deprecated.Rd:143: missing link ‘Luminescence’
Rd warning: Generate_DataFile-deprecated.Rd:167: missing link ‘read_BIN2R’
    Generate_DataFile_MG-deprecated         html  
Rd warning: Generate_DataFile_MG-deprecated.Rd:178: missing link ‘read_BIN2R’
    IntCal13                                html  
    IntCal20                                html  
    LT_RegenDose-deprecated                 html  
    MCMCsample                              html  
    Marine13                                html  
    Marine20                                html  
    ModelC14                                html  
    ModelOSL                                html  
    ModelPrior                              html  
    Model_Age                               html  
Rd warning: Model_Age.Rd:36: missing link ‘rjags’
    Model_AgeC14                            html  
Rd warning: Model_AgeC14.Rd:31: missing link ‘rjags’
    Model_AgeS                              html  
Rd warning: Model_AgeS.Rd:35: missing link ‘rjags’
    Model_Palaeodose                        html  
Rd warning: Model_Palaeodose.Rd:37: missing link ‘rjags’
    Palaeodose_Computation                  html  
Rd warning: Palaeodose_Computation.Rd:64: missing link ‘jags.model’
Rd warning: Palaeodose_Computation.Rd:67: missing link ‘jags.model’
Rd warning: Palaeodose_Computation.Rd:69: missing link ‘jags.model’
Rd warning: Palaeodose_Computation.Rd:177: missing link ‘rjags’
    SCMatrix                                html  
    SC_Ordered                              html  
    SHCal13                                 html  
    SHCal20                                 html  
    combine_DataFiles                       html  
    create_DataFile                         html  
Rd warning: create_DataFile.Rd:35: missing link ‘RLum.Analysis-class’
    create_FolderTemplates                  html  
    create_ThetaMatrix                      html  
    plot_Ages                               html  
    plot_MCMC                               html  
Rd warning: plot_MCMC.Rd:78: missing link ‘rjags’
    plot_RegDosePoints                      html  
    plot_Scatterplots                       html  
Rd warning: plot_Scatterplots.Rd:109: missing link ‘rjags’
    write_BayLumFiles                       html  
    write_YAMLConfigFile                    html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BayLum)