* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘BIGDAWG’ ...
** this is package ‘BIGDAWG’ version ‘3.0.3’
** package ‘BIGDAWG’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘BIGDAWG’
    finding HTML links ... done
    A                                       html  
    A.wrapper                               html  
    AA.df.check                             html  
    AA.df.cs                                html  
    AAtable.builder                         html  
    AlignObj.Create                         html  
    AlignObj.Update                         html  
    AlignmentFilter                         html  
    Append.System                           html  
    BIGDAWG                                 html  
    Build.Matrix                            html  
    Check.Cores                             html  
    Check.Data                              html  
    Check.Params.GLS                        html  
    Check.Params                            html  
    CheckAlleles                            html  
    CheckHLA                                html  
    CheckLoci                               html  
    CheckRelease                            html  
    CheckString.Allele                      html  
    CheckString.Locus                       html  
    Condense.EPL                            html  
    Create.Null.Table                       html  
    DRB345.Check.Wrapper                    html  
    DRB345.Check.Zygosity                   html  
    DRB345.Exp                              html  
    DRB345.parser                           html  
    EVSremoval                              html  
    Err.Log                                 html  
    Exon.Filter                             html  
    ExonPtnAlign.Create                     html  
    ExonPtnList                             html  
    Filler                                  html  
    Format.Allele                           html  
    Format.Tab                              html  
    GL2Tab.Loci                             html  
    GL2Tab.Sub                              html  
    GL2Tab.wrapper                          html  
    GLSconvert                              html  
    GetField                                html  
    GetFiles                                html  
    H.MC                                    html  
    H.MC.wrapper                            html  
    HLA_data                                html  
    HWE.ChiSq                               html  
    HWE                                     html  
    HWE.wrapper                             html  
    L                                       html  
    L.wrapper                               html  
    MergeData_Output                        html  
    PgrpExtract                             html  
    PgrpFormat                              html  
    PreCheck                                html  
    RunChiSq                                html  
    RunChiSq_c                              html  
    Stripper                                html  
    Tab2GL.Loci                             html  
    Tab2GL.Sub                              html  
    Tab2GL.wrapper                          html  
    TableMaker                              html  
    UpdateRelease                           html  
    buildHAPnames                           html  
    buildHAPsets                            html  
    cci                                     html  
    cci.pval                                html  
    cci.pval.list                           html  
    getAllele.Count                         html  
    getCS.Mat                               html  
    getCS.stat                              html  
    getFileName                             html  
    getHap                                  html  
    getObsFreq                              html  
    make2x2                                 html  
    makeComb                                html  
    prepData                                html  
    rmABstrings                             html  
    summaryGeno.2                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BIGDAWG)