* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘BGGM’ ...
** package ‘BGGM’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++-13 -std=gnu++17 accepts -g... yes
checking how to run the C++ preprocessor... g++-13 -std=gnu++17 -E
checking for macOS... not found as on Linux
checking for OpenMP... found
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
using C++17
make[1]: Entering directory '/tmp/RtmpTjhPwr/R.INSTALL19d3771f718011/BGGM/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c bggm_fast.cpp -o bggm_fast.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o BGGM.so RcppExports.o bggm_fast.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpTjhPwr/R.INSTALL19d3771f718011/BGGM/src'
make[1]: Entering directory '/tmp/RtmpTjhPwr/R.INSTALL19d3771f718011/BGGM/src'
make[1]: Leaving directory '/tmp/RtmpTjhPwr/R.INSTALL19d3771f718011/BGGM/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-BGGM/00new/BGGM/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘BGGM’
finding HTML links ... done
BGGM-package html
Sachs html
asd_ocd html
bfi html
bggm_missing html
coef.estimate html
coef.explore html
confirm html
constrained_posterior html
convergence html
csws html
depression_anxiety_t1 html
depression_anxiety_t2 html
estimate html
explore html
fisher_r_to_z html
fisher_z_to_r html
gen_net html
gen_ordinal html
ggm_compare_confirm html
ggm_compare_estimate html
ggm_compare_explore html
ggm_compare_ppc html
gss html
ifit html
impute_data html
iri html
map html
pcor_mat html
pcor_sum html
pcor_to_cor html
plot.confirm html
plot.ggm_compare_ppc html
plot.pcor_sum html
plot.predictability html
plot.roll_your_own html
plot.select html
plot.summary.estimate html
plot.summary.explore html
plot.summary.ggm_compare_estimate html
plot.summary.ggm_compare_explore html
plot.summary.select.explore html
plot.summary.var_estimate html
plot_prior html
posterior_predict html
posterior_samples html
precision html
predict.estimate html
predict.explore html
predict.var_estimate html
predictability html
predicted_probability html
print.BGGM html
prior_belief_ggm html
prior_belief_var html
ptsd html
ptsd_cor1 html
ptsd_cor2 html
ptsd_cor3 html
ptsd_cor4 html
regression_summary html
roll_your_own html
rsa html
select html
select.estimate html
select.explore html
select.ggm_compare_estimate html
select.ggm_compare_explore html
select.var_estimate html
summary.coef html
summary.estimate html
summary.explore html
summary.ggm_compare_estimate html
summary.ggm_compare_explore html
summary.predictability html
summary.select.explore html
summary.var_estimate html
tas html
var_estimate html
weighted_adj_mat html
women_math html
zero_order_cors html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BGGM)