* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘BGData’ ...
** this is package ‘BGData’ version ‘2.4.1’
** package ‘BGData’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-8) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGi8kiP/R.INSTALL11345c4578b7a5/BGData/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c fitLSYS.c -o fitLSYS.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c preprocess.c -o preprocess.o
preprocess.c: In function ‘preprocess_int._omp_fn.0’:
preprocess.c:40:31: warning: ‘mean’ may be used uninitialized [-Wmaybe-uninitialized]
   40 |                         *cout = mean;
      |                         ~~~~~~^~~~~~
preprocess.c:11:16: note: ‘mean’ was declared here
   11 |         double mean;
      |                ^~~~
preprocess.c: In function ‘preprocess_real._omp_fn.0’:
preprocess.c:91:31: warning: ‘mean’ may be used uninitialized [-Wmaybe-uninitialized]
   91 |                         *cout = mean;
      |                         ~~~~~~^~~~~~
preprocess.c:61:16: note: ‘mean’ was declared here
   61 |         double mean;
      |                ^~~~
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c rayOLS.c -o rayOLS.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c summarize.c -o summarize.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o BGData.so fitLSYS.o init.o preprocess.o rayOLS.o summarize.o -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGi8kiP/R.INSTALL11345c4578b7a5/BGData/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGi8kiP/R.INSTALL11345c4578b7a5/BGData/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGi8kiP/R.INSTALL11345c4578b7a5/BGData/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-BGData/00new/BGData/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘BGData’
    finding HTML links ... done
    BGData-class                            html  
    BGData-package                          html  
    BGData                                  html  
    FWD                                     html  
    GWAS                                    html  
    as.BGData                               html  
    chunkedApply                            html  
    chunkedMap                              html  
    file-backed-matrices                    html  
    findRelated                             html  
    geno-class                              html  
    geno                                    html  
    getG                                    html  
    getG_symDMatrix                         html  
    load.BGData                             html  
    multi-level-parallelism                 html  
    orderedMerge                            html  
    preprocess                              html  
    readRAW                                 html  
    segments                                html  
    summarize                               html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BGData)