* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘BET’ ...
** package ‘BET’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpOwEV1g/R.INSTALL3a7ccd50b99e89/BET/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c BET3.cpp -o BET3.o
BET3.cpp: In member function ‘std::map<std::vector<int>, int> N::BETfunction::allPosition(int)’:
BET3.cpp:417:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  417 |     for (int j = 0; j < b; j++){
      |                     ~~^~~
BET3.cpp: In member function ‘std::string N::BETfunction::convert(size_t)’:
BET3.cpp:485:7: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  485 |   int b[1000] = {0};
      |       ^
BET3.cpp: In member function ‘std::vector<std::__cxx11::basic_string<char> > N::BETfunction::idxFilter()’:
BET3.cpp:553:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  553 |       for(size_t i = 0; i < d; ++i){
      |                         ~~^~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o BET.so BET3.o RcppExports.o -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpOwEV1g/R.INSTALL3a7ccd50b99e89/BET/src'
make[1]: Entering directory '/tmp/RtmpOwEV1g/R.INSTALL3a7ccd50b99e89/BET/src'
make[1]: Leaving directory '/tmp/RtmpOwEV1g/R.INSTALL3a7ccd50b99e89/BET/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-BET/00new/BET/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘BET’
    finding HTML links ... done
    BEAST_null                              html  
    BET                                     html  
    BET_package                             html  
    BETs                                    html  
    Beast                                   html  
    bet.plot                                html  
    cellcount                               html  
    color                                   html  
    star                                    html  
    symm                                    html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BET)