* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘BED’ ...
** package ‘BED’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘BED’
    finding HTML links ... done
    BED                                     html  
    BEIDList                                html  
    BEIDs                                   html  
    beIDsToAllScopes                        html  
    bedCall                                 html  
    bedImport                               html  
    beidsServer                             html  
    cacheBedCall                            html  
    cacheBedResult                          html  
    checkBeIds                              html  
    checkBedCache                           html  
    checkBedConn                            html  
    cleanDubiousXRef                        html  
    clearBedCache                           html  
    compareBedInstances                     html  
    connectToBed                            html  
    convBeIdLists                           html  
    convBeIds                               html  
    convDfBeIds                             html  
    dumpEnsCore                             html  
    dumpNcbiDb                              html  
    dumpNcbiTax                             html  
    dumpUniprotDb                           html  
    exploreBe                               html  
    exploreConvPath                         html  
    filterByBEID                            html  
    findBe                                  html  
    findBeids                               html  
    firstCommonUpstreamBe                   html  
    focusOnScope.BEIDList                   html  
    focusOnScope                            html  
    forgetBedConnection                     html  
    genBePath                               html  
    genProbePath                            html  
    geneIDsToAllScopes                      html  
    getAllBeIdSources                       html  
    getBeIdConvTable                        html  
    getBeIdDescription                      html  
    getBeIdNameTable                        html  
    getBeIdNames                            html  
    getBeIdSymbolTable                      html  
    getBeIdSymbols                          html  
    getBeIdURL                              html  
    getBeIds                                html  
    getDirectOrigin                         html  
    getDirectProduct                        html  
    getEnsemblGeneIds                       html  
    getEnsemblPeptideIds                    html  
    getEnsemblTranscriptIds                 html  
    getGeneDescription                      html  
    getHomTable                             html  
    getNcbiGeneTransPep                     html  
    getOrgNames                             html  
    getRelevantIds                          html  
    getTargetedBe                           html  
    getTaxId                                html  
    getUniprot                              html  
    guessIdScope                            html  
    identicalScopes                         html  
    is.BEIDList                             html  
    largestBeSource                         html  
    listBe                                  html  
    listBeIdSources                         html  
    listDBAttributes                        html  
    listOrganisms                           html  
    listPlatforms                           html  
    loadBE                                  html  
    loadBENames                             html  
    loadBESymbols                           html  
    loadBEVersion                           html  
    loadBeAttribute                         html  
    loadBedModel                            html  
    loadBedOtherIndexes                     html  
    loadBedResult                           html  
    loadCodesFor                            html  
    loadCorrespondsTo                       html  
    loadHistory                             html  
    loadIsAssociatedTo                      html  
    loadIsExpressedAs                       html  
    loadIsHomologOf                         html  
    loadIsTranslatedIn                      html  
    loadLuceneIndexes                       html  
    loadNCBIEntrezGOFunctions               html  
    loadNcbiTax                             html  
    loadOrganisms                           html  
    loadPlf                                 html  
    loadProbes                              html  
    lsBedCache                              html  
    lsBedConnections                        html  
    metadata-set                            html  
    metadata                                html  
    registerBEDB                            html  
    scope                                   html  
    scopes                                  html  
    searchBeid                              html  
    searchId                                html  
    setBedVersion                           html  
    showBedDataModel                        html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BED)