* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘BCClong’ ...
** this is package ‘BCClong’ version ‘1.0.3’
** package ‘BCClong’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyfHg7u/R.INSTALL112e1e63a01fa7/BCClong/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c BCC.cpp -o BCC.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:693,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from BCC.cpp:1:
In constructor ‘arma::Mat<eT>::Mat(const arma::eOp<T1, eop_type>&) [with T1 = arma::Row<double>; eop_type = arma::eop_exp; eT = double]’,
inlined from ‘arma::unwrap_check_default<T1>::unwrap_check_default(const T1&, bool) [with T1 = arma::eOp<arma::Row<double>, arma::eop_exp>]’ at /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/unwrap.hpp:857:7,
inlined from ‘arma::unwrap_check<T1>::unwrap_check(const T1&, bool) [with T1 = arma::eOp<arma::Row<double>, arma::eop_exp>]’ at /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/unwrap.hpp:924:77,
inlined from ‘void arma::diagview<eT>::operator+=(const arma::Base<eT, T1>&) [with T1 = arma::eOp<arma::Row<double>, arma::eop_exp>; eT = double]’ at /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/diagview_meat.hpp:318:57:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:5480:18: warning: ‘tmp’ may be used uninitialized [-Wmaybe-uninitialized]
5480 | eop_type::apply(*this, X);
| ~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:683:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/eop_core_meat.hpp: In function ‘void arma::diagview<eT>::operator+=(const arma::Base<eT, T1>&) [with T1 = arma::eOp<arma::Row<double>, arma::eop_exp>; eT = double]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/eop_core_meat.hpp:246:1: note: by argument 1 of type ‘const double* const’ to ‘static void arma::eop_core<eop_type>::apply(outT&, const arma::eOp<T1, eop_type>&) [with outT = arma::Mat<double>; T1 = arma::Row<double>; eop_type = arma::eop_exp]’ declared here
246 | eop_core<eop_type>::apply(outT& out, const eOp<T1, eop_type>& x)
| ^~~~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:708:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/diagview_meat.hpp:318:57: note: ‘tmp’ declared here
318 | const unwrap_check<typename Proxy<T1>::stored_type> tmp(P.Q, have_alias);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Likelihood.cpp -o Likelihood.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c c_which.cpp -o c_which.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o BCClong.so BCC.o Likelihood.o RcppExports.o c_which.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyfHg7u/R.INSTALL112e1e63a01fa7/BCClong/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyfHg7u/R.INSTALL112e1e63a01fa7/BCClong/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyfHg7u/R.INSTALL112e1e63a01fa7/BCClong/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-BCClong/00new/BCClong/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘BCClong’
finding HTML links ... done
BCC.multi html
BayesT html
PBCseqfit html
conRes html
epil html
epil1 html
epil2 html
epil3 html
example html
example1 html
model.selection.criteria html
plot.BCC html
print.BCC html
summary.BCC html
traceplot html
trajplot html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BCClong)