* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ApplyPolygenicScore’ ...
** this is package ‘ApplyPolygenicScore’ version ‘4.0.0’
** package ‘ApplyPolygenicScore’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘ApplyPolygenicScore’
    finding HTML links ... done
    analyze.pgs.binary.predictiveness       html  
    apply.polygenic.score                   html  
    assess.pgs.vcf.allele.match             html  
    check.pgs.weight.columns                html  
    combine.pgs.bed                         html  
    combine.vcf.with.pgs                    html  
    convert.allele.frequency.to.dosage      html  
    convert.alleles.to.pgs.dosage           html  
    convert.pgs.to.bed                      html  
    create.pgs.boxplot                      html  
    create.pgs.density.plot                 html  
    create.pgs.rank.plot                    html  
    create.pgs.with.continuous.phenotype.plot
                                            html  
    flip.DNA.allele                         html  
    format.chromosome.notation              html  
    get.pgs.percentiles                     html  
    import.pgs.weight.file                  html  
    import.vcf                              html  
    parse.pgs.input.header                  html  
    run.pgs.regression                      html  
    write.apply.polygenic.score.output.to.file
                                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ApplyPolygenicScore)