* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘AnalyzeFMRI’ ...
** this is package ‘AnalyzeFMRI’ version ‘1.1-25’
** package ‘AnalyzeFMRI’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc-14 -std=gnu23
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-14 -std=gnu23 accepts -g... yes
checking for gcc-14 -std=gnu23 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc-14 -std=gnu23 -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking math.h usability... yes
checking math.h presence... yes
checking for math.h... yes
checking for scopy in -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas... yes
checking for sdot in -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas... yes
checking for scopy_... no
checking for sdot_... no
configure: WARNING: could not find scopy or sdot in your BLAS library, using our BLAS and LAPACK routines
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBm4tuS/R.INSTALL324c2c271763ea/AnalyzeFMRI/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c AnalyzeFMRI_init.c -o AnalyzeFMRI_init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c analyzeFMRI.c -o analyzeFMRI.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c lsame.f -o lsame.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c niftiFMRI.c -o niftiFMRI.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c sblas.f -o sblas.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sim.3d.GRF.c -o sim.3d.GRF.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -msse2 -mfpmath=sse -c slamc.f -o slamc.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c slapack.f -o slapack.o
slapack.f:15485:69:
15485 | INTEGER FUNCTION ILAENV( ISPEC, NAME, OPTS, N1, N2, N3,
| 1
Warning: Unused dummy argument ‘n3’ at (1) [-Wunused-dummy-argument]
slapack.f:15485:57:
15485 | INTEGER FUNCTION ILAENV( ISPEC, NAME, OPTS, N1, N2, N3,
| 1
Warning: Unused dummy argument ‘opts’ at (1) [-Wunused-dummy-argument]
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spatial.c -o spatial.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spatial.est.c -o spatial.est.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatial.filters.linear.f -o spatial.filters.linear.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spatial.filters.non.linear.c -o spatial.filters.non.linear.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spatial.mixture.c -o spatial.mixture.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper.f -o wrapper.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o AnalyzeFMRI.so AnalyzeFMRI_init.o analyzeFMRI.o lsame.o niftiFMRI.o sblas.o sim.3d.GRF.o slamc.o slapack.o spatial.o spatial.est.o spatial.filters.linear.o spatial.filters.non.linear.o spatial.mixture.o wrapper.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBm4tuS/R.INSTALL324c2c271763ea/AnalyzeFMRI/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBm4tuS/R.INSTALL324c2c271763ea/AnalyzeFMRI/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBm4tuS/R.INSTALL324c2c271763ea/AnalyzeFMRI/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-AnalyzeFMRI/00new/AnalyzeFMRI/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘AnalyzeFMRI’
finding HTML links ... done
EC.3D html
GaussSmoothArray html
GaussSmoothKernel html
ICAspat html
ICAtemp html
N2G.Class.Probability html
N2G.Density html
N2G.Fit html
N2G.Inverse html
N2G.Likelihood.Ratio html
N2G.Likelihood html
N2G html
N2G.Region html
N2G.Spatial.Mixture html
N2G.Transform html
NonLinearSmoothArray html
Q2R html
R2Q html
Sim.3D.GRF html
Sim.3D.GammaRF html
SmoothEst html
Threshold.Bonferroni html
Threshold.FDR html
Threshold.RF html
analyze2nifti html
centering html
cluster.threshold html
cov.est html
diminfo2fps html
eigenvalues html
f.analyze.file.summary html
f.analyzeIO.gui html
f.basic.hdr.list.create html
f.basic.hdr.nifti.list.create html
f.complete.hdr.nifti.list.create html
f.ica.fmri html
f.ica.fmri.gui html
f.icast.fmri html
f.icast.fmri.gui html
f.nifti.file.summary html
f.plot.ica.fmri html
f.plot.ica.fmri.jpg html
f.plot.volume.gui html
f.read.analyze.header html
f.read.analyze.slice html
f.read.analyze.slice.at.all.timepoints
html
f.read.analyze.tpt html
f.read.analyze.ts html
f.read.analyze.volume html
f.read.header html
f.read.nifti.header html
f.read.nifti.slice html
f.read.nifti.slice.at.all.timepoints html
f.read.nifti.tpt html
f.read.nifti.ts html
f.read.nifti.volume html
f.read.volume html
f.spectral.summary html
f.spectral.summary.nifti html
f.write.analyze html
f.write.array.to.img.2bytes html
f.write.array.to.img.8bit html
f.write.array.to.img.float html
f.write.list.to.hdr html
f.write.list.to.hdr.nifti html
f.write.nifti html
f.write.nii.array.to.img.2bytes html
f.write.nii.array.to.img.8bit html
f.write.nii.array.to.img.float html
fourDto2D html
fps2diminfo html
ijk2xyz html
magicfield html
mat34.to.TRSZ html
mat34.to.TZSR html
model.2.cov.func html
model.2.est.gamma html
nifti.quatern.to.mat44 html
orientation html
reduction html
st2xyzt html
threeDto4D html
twoDto4D html
with_dir html
xyz2ijk html
xyzt2st html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AnalyzeFMRI)