* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘AlphaPart’ ...
** package ‘AlphaPart’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-25) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-25) 13.2.0’
make[1]: Entering directory '/tmp/RtmpnEfDw1/R.INSTALL2a66a62207fc33/AlphaPart/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c AlphaPartDrop.cpp -o AlphaPartDrop.o
AlphaPartDrop.cpp: In function ‘SEXPREC* AlphaPartDrop(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
AlphaPartDrop.cpp:10:13: warning: unused variable ‘k’ [-Wunused-variable]
   10 |   int i, j, k, t, p;
      |             ^
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c AlphaPartDropGroup.cpp -o AlphaPartDropGroup.o
AlphaPartDropGroup.cpp: In function ‘SEXPREC* AlphaPartDropGroup(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
AlphaPartDropGroup.cpp:10:13: warning: unused variable ‘k’ [-Wunused-variable]
   10 |   int i, j, k, t, p;
      |             ^
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o AlphaPart.so AlphaPartDrop.o AlphaPartDropGroup.o init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpnEfDw1/R.INSTALL2a66a62207fc33/AlphaPart/src'
make[1]: Entering directory '/tmp/RtmpnEfDw1/R.INSTALL2a66a62207fc33/AlphaPart/src'
make[1]: Leaving directory '/tmp/RtmpnEfDw1/R.INSTALL2a66a62207fc33/AlphaPart/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-AlphaPart/00new/AlphaPart/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘AlphaPart’
    finding HTML links ... done
    AlphaPart                               html  
    AlphaPart.ped                           html  
    AlphaPartSubset                         html  
    AlphaPartSum                            html  
    UnknownFuns                             html  
    centerPop                               html  
    getScale                                html  
    mapLevels                               html  
    object.size                             html  
    pedFixBirthYear                         html  
    pedSetBase                              html  
    plot.summaryAlphaPart                   html  
    print.AlphaPart                         html  
    print.plotSummaryAlphaPart              html  
    print.summaryAlphaPart                  html  
    sEBV                                    html  
    savePlot                                html  
    savePlot.plotSummaryAlphaPart           html  
    summary.AlphaPart                       html  
    write.csv                               html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘AlphaPart’ as ‘AlphaPart_0.9.8_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (AlphaPart)