* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘AdmixPoly’ ...
** this is package ‘AdmixPoly’ version ‘1.0.0’
** package ‘AdmixPoly’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-17) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphjGCLn/R.INSTALL217eb85794ee6c/AdmixPoly/src'
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_64BIT_WORD=1 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c AdmixGlobal.cpp -o AdmixGlobal.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_64BIT_WORD=1 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c AdmixLocal.cpp -o AdmixLocal.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_64BIT_WORD=1 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_64BIT_WORD=1 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ReadFile.cpp -o ReadFile.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_64BIT_WORD=1 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c SimulatePop.cpp -o SimulatePop.o
g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o AdmixPoly.so AdmixGlobal.o AdmixLocal.o RcppExports.o ReadFile.o SimulatePop.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphjGCLn/R.INSTALL217eb85794ee6c/AdmixPoly/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphjGCLn/R.INSTALL217eb85794ee6c/AdmixPoly/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphjGCLn/R.INSTALL217eb85794ee6c/AdmixPoly/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-AdmixPoly/00new/AdmixPoly/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘AdmixPoly’
    finding HTML links ... done
    AdmixGlobal                             html  
    AdmixLocal                              html  
    AdmixPoly-package                       html  
    ComputeLogLik                           html  
    GlobalPlot                              html  
    LocalPlot                               html  
    ReadHPA                                 html  
    ReadVCF                                 html  
    SimulatePop                             html  
    UpdateParam                             html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AdmixPoly)