* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘AMR’ ...
** this is package ‘AMR’ version ‘3.0.1’
** package ‘AMR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘AMR’
    finding HTML links ... done
    AMR-deprecated                          html  
    AMR-options                             html  
    AMR                                     html  
    WHOCC                                   html  
    WHONET                                  html  
    ab_from_text                            html  
    ab_property                             html  
    add_custom_antimicrobials               html  
    add_custom_microorganisms               html  
    age                                     html  
    age_groups                              html  
    antibiogram                             html  
    antimicrobial_selectors                 html  
    antimicrobials                          html  
    as.ab                                   html  
    as.av                                   html  
    as.disk                                 html  
    as.mic                                  html  
    as.mo                                   html  
    as.sir                                  html  
    atc_online                              html  
    av_from_text                            html  
    av_property                             html  
    availability                            html  
    bug_drug_combinations                   html  
    clinical_breakpoints                    html  
    count                                   html  
    custom_eucast_rules                     html  
    custom_mdro_guideline                   html  
    dosage                                  html  
    eucast_rules                            html  
    example_isolates                        html  
    example_isolates_unclean                html  
    export_ncbi_biosample                   html  
    first_isolate                           html  
    g.test                                  html  
    get_episode                             html  
    ggplot_pca                              html  
    ggplot_sir                              html  
    guess_ab_col                            html  
    intrinsic_resistant                     html  
    italicise_taxonomy                      html  
    join                                    html  
    key_antimicrobials                      html  
    kurtosis                                html  
    like                                    html  
    mdro                                    html  
    mean_amr_distance                       html  
    microorganisms                          html  
    microorganisms.codes                    html  
    microorganisms.groups                   html  
    mo_matching_score                       html  
    mo_property                             html  
    mo_source                               html  
    pca                                     html  
    plot                                    html  
    proportion                              html  
    random                                  html  
    resistance_predict                      html  
    skewness                                html  
    top_n_microorganisms                    html  
    translate                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AMR)