* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ABM’ ...
** package ‘ABM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-24) 13.2.0’
make[1]: Entering directory '/tmp/RtmpQfpEXw/R.INSTALLd6d641d7e56b8/ABM/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Agent.cpp -o Agent.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Contact.cpp -o Contact.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Counter.cpp -o Counter.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Event.cpp -o Event.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Network.cpp -o Network.o
Network.cpp: In member function ‘virtual void ConfigurationModel::buildNetwork()’:
Network.cpp:59:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
59 | for (size_t i = 0, k = 0; i < d.size(); ++i)
| ~~^~~~~~~~~~
Network.cpp:60:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} [-Wsign-compare]
60 | for (size_t j = 0; j < d[i]; ++j)
Network.cpp: In member function ‘virtual void ConfigurationModel::grow(Agent&)’:
Network.cpp:100:13: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
100 | if (k == degree) return;
| ~~^~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Population.cpp -o Population.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RNG.cpp -o RNG.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Simulation.cpp -o Simulation.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c State.cpp -o State.o
State.cpp: In member function ‘bool State::match(const Rcpp::List&) const’:
State.cpp:84:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
84 | for (size_t i = 0; i < ns.size(); ++i) {
| ~~^~~~~~~~~~~
State.cpp: In member function ‘State& State::operator&=(const Rcpp::List&)’:
State.cpp:120:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
120 | for (size_t i = 0; i < ns.size(); ++i) {
| ~~^~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Transition.cpp -o Transition.o
In file included from ../inst/include/Simulation.h:3,
from Transition.cpp:1:
In member function ‘PAgent Population::agent(const Agent&) const’,
inlined from ‘virtual void ContactTransition::schedule(double, Agent&)’ at Transition.cpp:158:61:
../inst/include/Population.h:112:93: warning: ‘next_contact’ may be used uninitialized [-Wmaybe-uninitialized]
112 | PAgent agent(const Agent &agent) const { return agent._population == this ? _agents[agent._index] : nullptr; }
| ~~~~~~^~~~~~
Transition.cpp: In member function ‘virtual void ContactTransition::schedule(double, Agent&)’:
Transition.cpp:148:10: note: ‘next_contact’ was declared here
148 | Agent* next_contact;
| ^~~~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ABM.so Agent.o Contact.o Counter.o Event.o Network.o Population.o RNG.o RcppExports.o Simulation.o State.o Transition.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpQfpEXw/R.INSTALLd6d641d7e56b8/ABM/src'
make[1]: Entering directory '/tmp/RtmpQfpEXw/R.INSTALLd6d641d7e56b8/ABM/src'
make[1]: Leaving directory '/tmp/RtmpQfpEXw/R.INSTALLd6d641d7e56b8/ABM/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ABM/00new/ABM/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘ABM’
finding HTML links ... done
ABM-package html
Agent html
Contact html
Event html
Population html
Simulation html
State html
addAgent html
clearEvents html
getAgent html
getID html
getSize html
getState html
getTime html
getWaitingTime html
leave html
matchState html
newAgent html
newConfigurationModel html
newCounter html
newEvent html
newExpWaitingTime html
newGammaWaitingTime html
newPopulation html
newRandomMixing html
newStateLogger html
schedule html
setDeathTime html
setState html
setStates html
stateMatch html
unschedule html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘ABM’ as ‘ABM_0.4.1_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (ABM)