• using R version 4.4.3 (2025-02-28 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 13.3.0     GNU Fortran (GCC) 13.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'zetadiv/DESCRIPTION' ... OK
• this is package 'zetadiv' version '1.2.1'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'zetadiv' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s] OK
• checking whether the package can be unloaded cleanly ... [2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s] OK
• checking loading without being on the library search path ... [2s] OK
• checking whether startup messages can be suppressed ... [2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [24s] OK
• checking Rd files ... [1s] NOTE checkRd: (-1) glm.cons.Rd:54: Lost braces; missing escapes or markup?     54 | \item{method}{the method used in fitting the model. The default method "\code{glm.fit.cons}" uses function {nnnpls} from package nnls instead of \code{lm.fit} to impose the sign of the coefficients. As in \code{glm}, the alternative method "\code{model.frame}" returns the model frame and does no fitting.}        | ^
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [42s] ERROR Running examples in 'zetadiv-Ex.R' failed The error most likely occurred in: > ### Name: Zeta.order.ex > ### Title: Expectation of zeta diversity for a specific number of > ### assemblages or sites > ### Aliases: Zeta.order.ex > > ### ** Examples > > > utils::data(bird.spec.coarse) > data.spec.bird <- bird.spec.coarse[,3:193] > > zeta.bird <- Zeta.order.ex(data.spec.bird, order = 3) > zeta.bird $zeta.order [1] 3 $combinations [1] 302621 $zeta.val [1] 57.61204 $zeta.val.sd [1] 13.10351 > > ########## > s Error: object 's' not found Execution halted
• checking PDF version of manual ... [25s] OK
• checking HTML version of manual ... [8s] OK
• DONE

Status: 1 ERROR, 1 NOTE