• using R version 4.4.3 (2025-02-28 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 13.3.0     GNU Fortran (GCC) 13.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'whirl/DESCRIPTION' ... OK
• this is package 'whirl' version '0.3.0'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'whirl' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s] OK
• checking whether the package can be loaded with stated dependencies ... [3s] OK
• checking whether the package can be unloaded cleanly ... [3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s] OK
• checking loading without being on the library search path ... [3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s] OK
• checking Rd files ... [1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [4s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [576s] ERROR   Running 'testthat.R' [576s] Running the tests in 'tests/testthat.R' failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(whirl)   >   > test_check("whirl")   Unknown output format markua      [ FAIL 1 | WARN 0 | SKIP 12 | PASS 129 ]      ══ Skipped tests (12) ══════════════════════════════════════════════════════════   • On CRAN (12): 'test-biocompute.R:14:3', 'test-custom_logging.R:55:3',     'test-examples.R:26:3', 'test-run.R:27:3', 'test-run.R:70:3',     'test-run.R:81:3', 'test-run.R:89:3', 'test-run.R:106:3', 'test-run.R:130:3',     'test-run.R:147:3', 'test-strace.R:11:3', 'test-whirl_queue.R:9:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-mdformats.R:14:3'): pandoc works ───────────────────────────────   Error in `(function (input, format, ext, exec, cfg)   {       cmn = NULL       if (nrow(cfg) == 0L)           cfg = character(0)       else if (nrow(cfg) == 1L) {           if ("t" %in% colnames(cfg)) {               cfg = if (cfg[1L, "t"] == format)                   drop(cfg)               else NA           }           else {               cmn = drop(cfg)               cfg = NA           }       }       else {           if (!("t" %in% colnames(cfg)))               stop("for a config file with multiple output formats, there must be a field named \"t\"")           if (sum(idx <- is.na(cfg[, "t"])) > 1L)               stop("at most one \"t\" field can be NA")           if (sum(idx) == 1L)               cmn = cfg[idx, ]           cfg = cfg[!idx, , drop = FALSE]           cfg = cfg[cfg[, "t"] == format, ]           if (!is.null(dim(cfg))) {               if (nrow(cfg) > 1)                   stop("the output format is not unique in config")               cfg = character(0)           }       }       out = unname(if (!is.na(cfg["o"]))           cfg["o"]       else {           if (!is.na(cfg["output"]))               cfg["output"]           else {               with_ext(input, if (is.na(ext))                   pandoc_ext(format)               else ext)           }       })       cfg = cfg[setdiff(names(cfg), c("o", "output", "t"))]       cmd = c(pandoc_arg(cfg), pandoc_arg(cmn), "-t", format, "-o",           shQuote(out), shQuote(input))       message("Executing: pandoc ", paste(cmd, collapse = " "))       if (system2(exec, cmd) == 0L)           out       else stop("conversion failed")   })(dots[[1L]][[1L]], dots[[2L]][[1L]], dots[[3L]][[1L]], dots[[4L]][[1L]],       cfg = structure(character(0), dim = c(0L, 0L), dimnames = list(           NULL, NULL)))`: conversion failed   Backtrace:       ▆    1. ├─base::suppressMessages(...) at test-mdformats.R:14:3    2. │ └─base::withCallingHandlers(...)    3. └─whirl:::mdformats(...)    4. └─knitr::pandoc(input = log_html, format = mdfmt[[i]], ext = "md")    5. └─base::mapply(...)    6. └─knitr (local) `<fn>`(...)      [ FAIL 1 | WARN 0 | SKIP 12 | PASS 129 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s] OK
• checking PDF version of manual ... [18s] OK
• checking HTML version of manual ... [2s] OK
• DONE

Status: 1 ERROR