- using R version 4.5.3 (2026-03-11 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 14.3.0
GNU Fortran (GCC) 14.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'voluModel/DESCRIPTION' ... OK
- this is package 'voluModel' version '0.2.4'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'voluModel' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [15s] OK
- checking whether the package can be loaded with stated dependencies ... [13s] OK
- checking whether the package can be unloaded cleanly ... [13s] OK
- checking whether the namespace can be loaded with stated dependencies ... [14s] OK
- checking whether the namespace can be unloaded cleanly ... [15s] OK
- checking loading without being on the library search path ... [14s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [38s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [32s] ERROR
Running examples in 'voluModel-Ex.R' failed
The error most likely occurred in:
> ### Name: pointCompMap
> ### Title: Comparative point mapping
> ### Aliases: pointCompMap
> ### Keywords: plotting
>
> ### ** Examples
>
> set.seed(5)
> occs <- data.frame(cbind(decimalLatitude = sample(seq(7,35), 24),
+ decimalLongitude = sample(seq(-97, -70), 24)))
>
> set.seed(0)
> occs1 <- occs[sample(1:nrow(occs),
+ size = 12, replace = FALSE),]
> set.seed(10)
> occs2 <- occs[sample(1:nrow(occs),
+ size = 12, replace = FALSE),]
>
> pointCompMap(occs1 = occs1, occs2 = occs2,
+ occs1Col = "red", occs2Col = "orange",
+ agreeCol = "purple",
+ occs1Name = "2D",
+ occs2Name = "3D",
+ waterCol = "steelblue",
+ spName = "Steindachneria argentea",
+ ptSize = 2,
+ verbose = FALSE)
Warning: Use of `occ_dat[[occ_datIndices$xIndex]]` is discouraged.
ℹ Use `.data[[occ_datIndices$xIndex]]` instead.
Warning: Use of `occ_dat[[occ_datIndices$yIndex]]` is discouraged.
ℹ Use `.data[[occ_datIndices$yIndex]]` instead.
Error: gridtext has encountered a tag that isn't supported yet: <pre>
Only a very limited number of tags are currently supported.
Execution halted
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [55s] OK
Running 'testthat.R' [54s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [145s] ERROR
Error(s) in re-building vignettes:
--- re-building 'a_Introduction.Rmd' using rmarkdown
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
--- finished re-building 'a_Introduction.Rmd'
--- re-building 'b_RasterProcessing.Rmd' using rmarkdown
--- finished re-building 'b_RasterProcessing.Rmd'
--- re-building 'c_DataSampling.Rmd' using rmarkdown
Quitting from c_DataSampling.Rmd:123-130 [plot downsample]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! gridtext has encountered a tag that isn't supported yet: <pre>
Only a very limited number of tags are currently supported.
---
Backtrace:
▆
1. ├─base::withVisible(knit_print(x, ...))
2. ├─knitr::knit_print(x, ...)
3. └─knitr:::knit_print.default(x, ...)
4. └─knitr::normal_print(x)
5. ├─base::print(x)
6. └─ggplot2 (local) `print.ggplot2::ggplot`(x)
7. ├─ggplot2::ggplot_gtable(data)
8. └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
9. └─ggplot2::element_render(...)
10. ├─ggplot2::element_grob(el, ...)
11. └─ggtext:::element_grob.element_markdown(el, ...)
12. └─gridtext::richtext_grob(...)
13. └─base::mapply(...)
14. └─gridtext (local) `<fn>`(...)
15. └─gridtext:::process_tags(xml2::as_list(doctree)$html$body, drawing_context)
16. └─gridtext:::dispatch_tag(node[[i]], tags[i], drawing_context)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'c_DataSampling.Rmd' failed with diagnostics:
gridtext has encountered a tag that isn't supported yet: <pre>
Only a very limited number of tags are currently supported.
--- failed re-building 'c_DataSampling.Rmd'
--- re-building 'd_Visualization.Rmd' using rmarkdown
Quitting from d_Visualization.Rmd:133-138 [pointCompMap]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! gridtext has encountered a tag that isn't supported yet: <pre>
Only a very limited number of tags are currently supported.
---
Backtrace:
▆
1. ├─base::withVisible(knit_print(x, ...))
2. ├─knitr::knit_print(x, ...)
3. └─knitr:::knit_print.default(x, ...)
4. └─knitr::normal_print(x)
5. ├─base::print(x)
6. └─ggplot2 (local) `print.ggplot2::ggplot`(x)
7. ├─ggplot2::ggplot_gtable(data)
8. └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
9. └─ggplot2::element_render(...)
10. ├─ggplot2::element_grob(el, ...)
11. └─ggtext:::element_grob.element_markdown(el, ...)
12. └─gridtext::richtext_grob(...)
13. └─base::mapply(...)
14. └─gridtext (local) `<fn>`(...)
15. └─gridtext:::process_tags(xml2::as_list(doctree)$html$body, drawing_context)
16. └─gridtext:::dispatch_tag(node[[i]], tags[i], drawing_context)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'd_Visualization.Rmd' failed with diagnostics:
gridtext has encountered a tag that isn't supported yet: <pre>
Only a very limited number of tags are currently supported.
--- failed re-building 'd_Visualization.Rmd'
--- re-building 'e_GLMWorkflow.Rmd' using rmarkdown
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Quitting from e_GLMWorkflow.Rmd:106-130 [downsample to voxel]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! gridtext has encountered a tag that isn't supported yet: <pre>
Only a very limited number of tags are currently supported.
---
Backtrace:
▆
1. ├─base::withVisible(knit_print(x, ...))
2. ├─knitr::knit_print(x, ...)
3. └─knitr:::knit_print.default(x, ...)
4. └─knitr::normal_print(x)
5. ├─base::print(x)
6. └─ggplot2 (local) `print.ggplot2::ggplot`(x)
7. ├─ggplot2::ggplot_gtable(data)
8. └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
9. └─ggplot2::element_render(...)
10. ├─ggplot2::element_grob(el, ...)
11. └─ggtext:::element_grob.element_markdown(el, ...)
12. └─gridtext::richtext_grob(...)
13. └─base::mapply(...)
14. └─gridtext (local) `<fn>`(...)
15. └─gridtext:::process_tags(xml2::as_list(doctree)$html$body, drawing_context)
16. └─gridtext:::dispatch_tag(node[[i]], tags[i], drawing_context)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'e_GLMWorkflow.Rmd' failed with diagnostics:
gridtext has encountered a tag that isn't supported yet: <pre>
Only a very limited number of tags are currently supported.
--- failed re-building 'e_GLMWorkflow.Rmd'
SUMMARY: processing the following files failed:
'c_DataSampling.Rmd' 'd_Visualization.Rmd' 'e_GLMWorkflow.Rmd'
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [19s] OK
- checking HTML version of manual ... [6s] OK
- DONE
Status: 2 ERRORs