* installing *source* package 'visPedigree' ...
** package 'visPedigree' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2026_03_11_01_50_00_27067/RtmpKYPC8p/R.INSTALL24657f4034/visPedigree/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DARMA_USE_OPENMP   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:28,
                 from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
                 from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:111: warning: "ARMA_USE_OPENMP" redefined
  111 |   #define ARMA_USE_OPENMP
      | 
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DARMA_USE_OPENMP   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c pedigree_calculators.cpp -o pedigree_calculators.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:28,
                 from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
                 from pedigree_calculators.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:111: warning: "ARMA_USE_OPENMP" redefined
  111 |   #define ARMA_USE_OPENMP
      | 
<command-line>: note: this is the location of the previous definition
pedigree_calculators.cpp: In function 'arma::mat cpp_calculate_D(Rcpp::IntegerVector, Rcpp::IntegerVector, const arma::mat&)':
pedigree_calculators.cpp:369:18: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
  369 |     if (A.n_rows != n || A.n_cols != n) {
      |         ~~~~~~~~~^~~~
pedigree_calculators.cpp:369:35: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
  369 |     if (A.n_rows != n || A.n_cols != n) {
      |                          ~~~~~~~~~^~~~
pedigree_calculators.cpp: In function 'arma::vec cpp_solve_A(Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, arma::vec)':
pedigree_calculators.cpp:481:56: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  481 |     if (dam.size() != n || dii.size() != n || b.size() != n) {
      |                                               ~~~~~~~~~^~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o visPedigree.dll tmp.def RcppExports.o pedigree_calculators.o -fopenmp -LD:/RCompile/recent/R-4.4.3p/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.3p/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3p/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2026_03_11_01_50_00_27067/RtmpKYPC8p/R.INSTALL24657f4034/visPedigree/src'
make[1]: Entering directory '/d/temp/2026_03_11_01_50_00_27067/RtmpKYPC8p/R.INSTALL24657f4034/visPedigree/src'
make[1]: Leaving directory '/d/temp/2026_03_11_01_50_00_27067/RtmpKYPC8p/R.INSTALL24657f4034/visPedigree/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-visPedigree/00new/visPedigree/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'visPedigree' as visPedigree_1.0.1.zip
* DONE (visPedigree)