* installing *source* package 'surtvep' ...
** package 'surtvep' successfully unpacked and MD5 sums checked
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2025_10_21_12_46_10_10564/Rtmp8iS27M/R.INSTALLabdc6ee01d84/surtvep/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c PenalizeStopCpp.cpp -o PenalizeStopCpp.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from PenalizeStopCpp.cpp:5:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:192,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In function 'SEXPREC* Rcpp::internal::primitive_wrap__impl__cast(const T&, Rcpp::traits::false_type) [with T = int]',
inlined from 'SEXPREC* Rcpp::internal::primitive_wrap__impl(const T&, Rcpp::traits::r_type_primitive_tag) [with T = int]' at D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/internal/wrap.h:471:46,
inlined from 'SEXPREC* Rcpp::internal::primitive_wrap(const T&) [with T = int]' at D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/internal/wrap.h:495:40,
inlined from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_primitive_tag) [with T = int]' at D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/internal/wrap.h:744:34,
inlined from 'SEXPREC* Rcpp::wrap(const T&) [with T = int]' at D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/internal/wrap_end.h:30:38,
inlined from 'Rcpp::internal::generic_name_proxy<RTYPE, StoragePolicy>& Rcpp::internal::generic_name_proxy<RTYPE, StoragePolicy>::operator=(const T&) [with T = int; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/vector/proxy.h:157:11,
inlined from 'Rcpp::List Lambda_estimate_ties2(int, arma::colvec&, arma::mat&, arma::mat&, arma::mat&, arma::vec&)' at PenalizeStopCpp.cpp:2649:25:
D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/internal/wrap.h:448:41: warning: 'index' may be used uninitialized [-Wmaybe-uninitialized]
448 | r_vector_start<RTYPE>(x)[0] = object;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
PenalizeStopCpp.cpp: In function 'Rcpp::List Lambda_estimate_ties2(int, arma::colvec&, arma::mat&, arma::mat&, arma::mat&, arma::vec&)':
PenalizeStopCpp.cpp:2625:13: note: 'index' was declared here
2625 | int index;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c header.cpp -o header.o
g++ -std=gnu++17 -shared -s -static-libgcc -o surtvep.dll tmp.def PenalizeStopCpp.o RcppExports.o header.o -fopenmp -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_10_21_12_46_10_10564/Rtmp8iS27M/R.INSTALLabdc6ee01d84/surtvep/src'
make[1]: Entering directory '/d/temp/2025_10_21_12_46_10_10564/Rtmp8iS27M/R.INSTALLabdc6ee01d84/surtvep/src'
make[1]: Leaving directory '/d/temp/2025_10_21_12_46_10_10564/Rtmp8iS27M/R.INSTALLabdc6ee01d84/surtvep/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-surtvep/00new/surtvep/libs/x64
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'surtvep' as surtvep_1.0.0.zip
* DONE (surtvep)