* installing *source* package 'stratEst' ...
** package 'stratEst' successfully unpacked and MD5 sums checked
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2025_10_08_01_50_00_15188/RtmpmWNIIP/R.INSTALL314786875495/stratEst/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rcpparma_hello_world.cpp -o rcpparma_hello_world.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from rcpparma_hello_world.cpp:4:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
gcc -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c registerDynamicSymbol.c -o registerDynamicSymbol.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stratEst.cpp -o stratEst.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from stratEst.cpp:3:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
stratEst.cpp: In function 'arma::field<arma::Mat<double> > stratEst_SE(arma::cube&, arma::cube&, arma::vec&, arma::mat&, arma::mat, arma::vec, arma::vec, arma::vec, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::vec, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, std::string, arma::mat, bool, arma::vec, bool, arma::vec&, arma::vec&, arma::vec&, arma::vec&, arma::vec&, arma::vec&)':
stratEst.cpp:1114:28: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1114 | if( arma::is_finite(contrib) ){
| ~~~~~~~~~~~~~~~^~~~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:518:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
stratEst.cpp:1131:28: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1131 | if( arma::is_finite(contrib) ){
| ~~~~~~~~~~~~~~~^~~~~~~~~
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
stratEst.cpp: In function 'Rcpp::List stratEst_cpp(arma::mat, arma::mat, arma::vec, arma::mat, arma::vec, arma::mat, arma::mat, bool, arma::vec, arma::vec, std::string, bool, bool, bool, bool, std::string, std::string, bool, bool, bool, int, std::string, std::string, int, double, int, int, double, int, int, double, int, int, bool, bool, double, bool)':
stratEst.cpp:3086:22: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
3086 | if( arma::is_finite(chi) ){
| ~~~~~~~~~~~~~~~^~~~~
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
stratEst.cpp:3111:36: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
3111 | if( k_id > 0 && arma::is_finite(chi_id) ){
| ~~~~~~~~~~~~~~~^~~~~~~~
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stratEst_data.cpp -o stratEst_data.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from stratEst_data.cpp:3:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -shared -s -static-libgcc -o stratEst.dll tmp.def RcppExports.o rcpparma_hello_world.o registerDynamicSymbol.o stratEst.o stratEst_data.o -fopenmp -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_10_08_01_50_00_15188/RtmpmWNIIP/R.INSTALL314786875495/stratEst/src'
make[1]: Entering directory '/d/temp/2025_10_08_01_50_00_15188/RtmpmWNIIP/R.INSTALL314786875495/stratEst/src'
make[1]: Leaving directory '/d/temp/2025_10_08_01_50_00_15188/RtmpmWNIIP/R.INSTALL314786875495/stratEst/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-stratEst/00new/stratEst/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'stratEst' as stratEst_1.1.7.zip
* DONE (stratEst)