- using R version 4.5.3 (2026-03-11 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 14.3.0
GNU Fortran (GCC) 14.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'spatsoc/DESCRIPTION' ... OK
- this is package 'spatsoc' version '0.2.2'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'spatsoc' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s] OK
- checking whether the package can be unloaded cleanly ... [0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s] OK
- checking whether the namespace can be unloaded cleanly ... [1s] OK
- checking loading without being on the library search path ... [0s] OK
- checking whether startup messages can be suppressed ... [0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [4s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [9s] ERROR
Running examples in 'spatsoc-Ex.R' failed
The error most likely occurred in:
> ### Name: group_lines
> ### Title: Group Lines
> ### Aliases: group_lines
>
> ### ** Examples
>
> # Load data.table
> library(data.table)
> ## Don't show:
> data.table::setDTthreads(1)
> ## End(Don't show)
>
> # Read example data
> DT <- fread(system.file("extdata", "DT.csv", package = "spatsoc"))
>
> # Subset only individuals A, B, and C
> DT <- DT[ID %in% c('A', 'B', 'C')]
>
> # Cast the character column to POSIXct
> DT[, datetime := as.POSIXct(datetime, tz = 'UTC')]
>
> # EPSG code for example data
> utm <- 32736
>
> group_lines(DT, threshold = 50, projection = utm, sortBy = 'datetime',
+ id = 'ID', coords = c('X', 'Y'))
ID X Y datetime population group
<char> <num> <num> <POSc> <int> <num>
1: A 715851.4 5505340 2016-11-01 00:00:54 1 1
2: A 715822.8 5505289 2016-11-01 02:01:22 1 1
3: A 715872.9 5505252 2016-11-01 04:01:24 1 1
4: A 715820.5 5505231 2016-11-01 06:01:05 1 1
5: A 715830.6 5505227 2016-11-01 08:01:11 1 1
---
4265: C 702093.6 5510180 2017-02-28 14:00:44 1 1
4266: C 702086.0 5510183 2017-02-28 16:00:42 1 1
4267: C 702961.8 5509447 2017-02-28 18:00:53 1 1
4268: C 703130.4 5509528 2017-02-28 20:00:54 1 1
4269: C 702872.3 5508531 2017-02-28 22:00:18 1 1
>
> ## Daily movement tracks
> # Temporal grouping
> group_times(DT, datetime = 'datetime', threshold = '1 day')
ID X Y datetime population group timegroup
<char> <num> <num> <POSc> <int> <num> <int>
1: A 715851.4 5505340 2016-11-01 00:00:54 1 1 1
2: A 715822.8 5505289 2016-11-01 02:01:22 1 1 1
3: A 715872.9 5505252 2016-11-01 04:01:24 1 1 1
4: A 715820.5 5505231 2016-11-01 06:01:05 1 1 1
5: A 715830.6 5505227 2016-11-01 08:01:11 1 1 1
---
4265: C 702093.6 5510180 2017-02-28 14:00:44 1 1 120
4266: C 702086.0 5510183 2017-02-28 16:00:42 1 1 120
4267: C 702961.8 5509447 2017-02-28 18:00:53 1 1 120
4268: C 703130.4 5509528 2017-02-28 20:00:54 1 1 120
4269: C 702872.3 5508531 2017-02-28 22:00:18 1 1 120
>
> # Subset only first 50 days
> DT <- DT[timegroup < 25]
>
> # Spatial grouping
> group_lines(DT, threshold = 50, projection = utm,
+ id = 'ID', coords = c('X', 'Y'),
+ timegroup = 'timegroup', sortBy = 'datetime')
group column will be overwritten by this function
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [28s] OK
Running 'testthat.R' [28s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [25s] OK
- checking PDF version of manual ... [19s] OK
- checking HTML version of manual ... [3s] OK
- DONE
Status: 1 ERROR