• using R version 4.4.3 (2025-02-28 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 13.3.0     GNU Fortran (GCC) 13.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'snic/DESCRIPTION' ... OK
• this is package 'snic' version '0.6.0'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'snic' can be installed ... OK See the install log for details.
• used C compiler: 'gcc.exe (GCC) 13.3.0'
• used C++ compiler: 'g++.exe (GCC) 13.3.0'
• checking installed package size ... NOTE   installed size is 6.1Mb   sub-directories of 1Mb or more:     demo-geotiff 1.3Mb     doc 3.2Mb
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s] OK
• checking whether the package can be unloaded cleanly ... [0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s] OK
• checking whether the namespace can be unloaded cleanly ... [1s] OK
• checking loading without being on the library search path ... [0s] OK
• checking whether startup messages can be suppressed ... [0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s] OK
• checking Rd files ... [1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compiled code ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [8s] ERROR Running examples in 'snic-Ex.R' failed The error most likely occurred in: > ### Name: seeds_api > ### Title: Convert seed coordinates between raster index, map, and WGS84 > ### systems > ### Aliases: seeds_api as_seeds_rc as_seeds_xy as_seeds_wgs84 > > ### ** Examples > > if (requireNamespace("terra", quietly = TRUE)) { + # Load a test Sentinel-2 band + s2_file <- system.file( + "demo-geotiff/S2_20LMR_B04_20220630.tif", + package = "snic" + ) + s2_rast <- terra::rast(s2_file) + + # Create some test coordinates in pixel space + seeds_rc <- data.frame(r = c(10, 20, 30), c = c(15, 25, 35)) + + # Convert to map coordinates (x,y) + seeds_xy <- as_seeds_xy(seeds_rc, s2_rast) + + # Convert to geographic coordinates (lat,lon) + seeds_wgs84 <- as_seeds_wgs84(seeds_rc, s2_rast) + } Warning: PROJ: proj_create_from_database: Cannot find proj.db (GDAL error 1) Error: [project] output crs is not valid Execution halted
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [16s] ERROR   Running 'spelling.R' [0s]   Running 'testthat.R' [15s] Running the tests in 'tests/testthat.R' failed. Complete output:   > library(testthat)   > library(snic)   >   > test_check("snic")   Saving _problems/test-grid-helpers-216.R   Saving _problems/test-grid-helpers-249.R   Saving _problems/test-grid-helpers-275.R   Saving _problems/test-grid-helpers-303.R   Saving _problems/test-grid-helpers-346.R   Saving _problems/test-plot-140.R   Saving _problems/test-snic-core-56.R   Saving _problems/test-snic-generic-67.R   [ FAIL 8 | WARN 33 | SKIP 0 | PASS 119 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-grid-helpers.R:211:5'): rectangular grids match counts and spacing for arrays and rasters ──   Error in `.wgs84_to_xy.SpatRaster(x, seeds_wgs84)`: .seeds_type(seeds_wgs84) == "wgs84" is not TRUE   Backtrace:       ▆    1. └─snic (local) expect_grid_consistency(...) at test-grid-helpers.R:211:5    2. └─snic:::.wgs84_to_rc(imgs$SpatRaster, rast_seeds) at test-grid-helpers.R:72:9    3. ├─snic:::.wgs84_to_xy(x, seeds_wgs84)    4. └─snic:::.wgs84_to_xy.SpatRaster(x, seeds_wgs84)    5. └─base::stopifnot(.seeds_type(seeds_wgs84) == "wgs84")   ── Error ('test-grid-helpers.R:244:5'): diamond grids add shifted points while staying within padded bounds ──   Error in `.wgs84_to_xy.SpatRaster(x, seeds_wgs84)`: .seeds_type(seeds_wgs84) == "wgs84" is not TRUE   Backtrace:       ▆    1. └─snic (local) expect_grid_consistency(...) at test-grid-helpers.R:244:5    2. └─snic:::.wgs84_to_rc(imgs$SpatRaster, rast_seeds) at test-grid-helpers.R:72:9    3. ├─snic:::.wgs84_to_xy(x, seeds_wgs84)    4. └─snic:::.wgs84_to_xy.SpatRaster(x, seeds_wgs84)    5. └─base::stopifnot(.seeds_type(seeds_wgs84) == "wgs84")   ── Error ('test-grid-helpers.R:270:5'): hexagonal grids generate additional offset rows for both backends ──   Error in `.wgs84_to_xy.SpatRaster(x, seeds_wgs84)`: .seeds_type(seeds_wgs84) == "wgs84" is not TRUE   Backtrace:       ▆    1. └─snic (local) expect_grid_consistency(...) at test-grid-helpers.R:270:5    2. └─snic:::.wgs84_to_rc(imgs$SpatRaster, rast_seeds) at test-grid-helpers.R:72:9    3. ├─snic:::.wgs84_to_xy(x, seeds_wgs84)    4. └─snic:::.wgs84_to_xy.SpatRaster(x, seeds_wgs84)    5. └─base::stopifnot(.seeds_type(seeds_wgs84) == "wgs84")   ── Error ('test-grid-helpers.R:297:5'): random grids are reproducible, unique, and match count estimates ──   Error in `.wgs84_to_xy.SpatRaster(x, seeds_wgs84)`: .seeds_type(seeds_wgs84) == "wgs84" is not TRUE   Backtrace:       ▆    1. └─snic (local) expect_grid_consistency(...) at test-grid-helpers.R:297:5    2. └─snic:::.wgs84_to_rc(imgs$SpatRaster, rast_seeds) at test-grid-helpers.R:72:9    3. ├─snic:::.wgs84_to_xy(x, seeds_wgs84)    4. └─snic:::.wgs84_to_xy.SpatRaster(x, seeds_wgs84)    5. └─base::stopifnot(.seeds_type(seeds_wgs84) == "wgs84")   ── Error ('test-grid-helpers.R:341:5'): single seed per dimension is centered for both backends ──   Error in `.wgs84_to_xy.SpatRaster(x, seeds_wgs84)`: .seeds_type(seeds_wgs84) == "wgs84" is not TRUE   Backtrace:       ▆    1. └─snic (local) expect_grid_consistency(...) at test-grid-helpers.R:341:5    2. └─snic:::.wgs84_to_rc(imgs$SpatRaster, rast_seeds) at test-grid-helpers.R:72:9    3. ├─snic:::.wgs84_to_xy(x, seeds_wgs84)    4. └─snic:::.wgs84_to_xy.SpatRaster(x, seeds_wgs84)    5. └─base::stopifnot(.seeds_type(seeds_wgs84) == "wgs84")   ── Error ('test-plot.R:140:9'): seed overlays align for rc, xy, and wgs84 inputs ──   Error: [project] output crs is not valid   Backtrace:       ▆    1. └─snic:::.rc_to_wgs84(template, seeds_rc) at test-plot.R:140:9    2. ├─snic:::.xy_to_wgs84(x, seeds_xy)    3. └─snic:::.xy_to_wgs84.SpatRaster(x, seeds_xy)    4. ├─terra::project(v, "EPSG:4326")    5. └─terra::project(v, "EPSG:4326")    6. └─terra (local) .local(x, ...)    7. └─terra:::messages(x, "project")    8. └─terra:::error(f, x@pntr$getError())   ── Error ('test-snic-core.R:56:5'): SpatRaster inputs accept WGS84 seeds ───────   Error: [project] input crs is not valid   Backtrace:       ▆    1. └─snic:::.rc_to_wgs84(backends$raster, seeds_rc) at test-snic-core.R:56:5    2. ├─snic:::.xy_to_wgs84(x, seeds_xy)    3. └─snic:::.xy_to_wgs84.SpatRaster(x, seeds_xy)    4. ├─terra::project(v, "EPSG:4326")    5. └─terra::project(v, "EPSG:4326")    6. └─terra (local) .local(x, ...)    7. └─terra:::messages(x, "project")    8. └─terra:::error(f, x@pntr$getError())   ── Error ('test-snic-generic.R:67:5'): SpatRaster: round-trip conversions with defined CRS (WGS84) are consistent ──   Error: [project] input crs is not valid   Backtrace:        ▆     1. ├─snic:::.wgs84_to_rc(rast, .rc_to_wgs84(rast, seeds_rc)) at test-snic-generic.R:67:5     2. │ ├─snic:::.wgs84_to_xy(x, seeds_wgs84)     3. │ └─snic:::.wgs84_to_xy.SpatRaster(x, seeds_wgs84)     4. │ ├─base::stopifnot(.seeds_type(seeds_wgs84) == "wgs84")     5. │ └─snic:::.seeds_type(seeds_wgs84)     6. │ ├─c("r", "c") %in% colnames(seeds)     7. │ └─base::colnames(seeds)     8. │ └─base::is.data.frame(x)     9. └─snic:::.rc_to_wgs84(rast, seeds_rc)    10. ├─snic:::.xy_to_wgs84(x, seeds_xy)    11. └─snic:::.xy_to_wgs84.SpatRaster(x, seeds_xy)    12. ├─terra::project(v, "EPSG:4326")    13. └─terra::project(v, "EPSG:4326")    14. └─terra (local) .local(x, ...)    15. └─terra:::messages(x, "project")    16. └─terra:::error(f, x@pntr$getError())      [ FAIL 8 | WARN 33 | SKIP 0 | PASS 119 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [98s] ERROR Error(s) in re-building vignettes: --- re-building 'snic-array-pipeline.Rmd' using rmarkdown --- finished re-building 'snic-array-pipeline.Rmd' --- re-building 'snic-spatraster-pipeline.Rmd' using rmarkdown Quitting from snic-spatraster-pipeline.Rmd:70-74 [seeds] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! [project] output crs is not valid --- Backtrace:     ▆  1. └─snic::snic_grid(s2, type = "rectangular", spacing = 24, padding = 2)  2. └─snic:::.rc_to_wgs84(x, seeds)  3. ├─snic:::.xy_to_wgs84(x, seeds_xy)  4. └─snic:::.xy_to_wgs84.SpatRaster(x, seeds_xy)  5. ├─terra::project(v, "EPSG:4326")  6. └─terra::project(v, "EPSG:4326")  7. └─terra (local) .local(x, ...)  8. └─terra:::messages(x, "project")  9. └─terra:::error(f, x@pntr$getError()) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'snic-spatraster-pipeline.Rmd' failed with diagnostics: [project] output crs is not valid --- failed re-building 'snic-spatraster-pipeline.Rmd' SUMMARY: processing the following file failed:   'snic-spatraster-pipeline.Rmd' Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [19s] OK
• checking HTML version of manual ... [4s] OK
• DONE

Status: 3 ERRORs, 1 NOTE