* installing *source* package 'skm' ...
** package 'skm' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2025_10_08_01_50_00_15188/RtmpGK6wIT/R.INSTALL1c3909c953e5/skm/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dist_wlatlng.cpp -o dist_wlatlng.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from dist_wlatlng.h:7,
from dist_wlatlng.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c matrix_minmax.cpp -o matrix_minmax.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from matrix_minmax.h:5,
from matrix_minmax.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
matrix_minmax.cpp: In function 'arma::uword col_min_idx(const arma::colvec&, const arma::ucolvec&)':
matrix_minmax.cpp:13:10: warning: 'eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
13 | u.min(min_val_idx);
| ~~~~~^~~~~~~~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:201:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:56: note: declared here
544 | [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const;
| ^~~
matrix_minmax.cpp:17:16: warning: 'elem_type arma::Base<elem_type, derived>::min(arma::uword&) const [with elem_type = double; derived = arma::subview_elem1<double, arma::Mat<unsigned int> >; arma::uword = unsigned int]' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
17 | u(wlmt).min(min_val_idx); min_val_idx = wlmt(min_val_idx);
| ~~~~~~~~~~~^~~~~~~~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:675:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/Base_meat.hpp:195:1: note: declared here
195 | Base<elem_type,derived>::min(uword& index_of_min_val) const
| ^~~~~~~~~~~~~~~~~~~~~~~
matrix_minmax.cpp: In function 'arma::uword col_max_idx(const arma::colvec&, const arma::ucolvec&)':
matrix_minmax.cpp:33:10: warning: 'eT arma::Mat<eT>::max(arma::uword&) const [with eT = double; arma::uword = unsigned int]' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
33 | u.max(max_val_idx);
| ~~~~~^~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:545:56: note: declared here
545 | [[deprecated("use .index_max() instead")]] inline eT max(uword& index_of_max_val) const;
| ^~~
matrix_minmax.cpp:37:16: warning: 'elem_type arma::Base<elem_type, derived>::max(arma::uword&) const [with elem_type = double; derived = arma::subview_elem1<double, arma::Mat<unsigned int> >; arma::uword = unsigned int]' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
37 | u(wlmt).max(max_val_idx); max_val_idx = wlmt(max_val_idx);
| ~~~~~~~~~~~^~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/Base_meat.hpp:207:1: note: declared here
207 | Base<elem_type,derived>::max(uword& index_of_max_val) const
| ^~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c skm.cpp -o skm.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from skm.h:5,
from skm.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
skm.cpp: In function 'Rcpp::List skm_mlp_cpp(const arma::mat&, arma::uword, const arma::uvec&, arma::uword, arma::uword)':
skm.cpp:396:17: warning: 'eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
396 | o = o_list.min(optim_at);
| ~~~~~~~~~~^~~~~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:201:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:56: note: declared here
544 | [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const;
| ^~~
skm.cpp: In function 'Rcpp::List skm_mls_cpp(const arma::mat&, arma::uword, arma::uvec, const arma::uvec&, arma::uword, arma::uword)':
skm.cpp:483:17: warning: 'eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
483 | o = o_list.min(optim_at);
| ~~~~~~~~~~^~~~~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:692:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7829:1: note: declared here
7829 | Mat<eT>::min(uword& index_of_min_val) const
| ^~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c skm_gdp.cpp -o skm_gdp.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from skm_gdp.h:5,
from skm_gdp.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
skm_gdp.cpp: In function 'arma::uvec skm_gdp_cpp(arma::mat, arma::uword)':
skm_gdp.cpp:57:35: warning: 'eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
57 | rs = arma::sum(x, 1); rs.min(id);
| ~~~~~~^~~~
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:201:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:56: note: declared here
544 | [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const;
| ^~~
g++ -std=gnu++17 -shared -s -static-libgcc -o skm.dll tmp.def RcppExports.o dist_wlatlng.o matrix_minmax.o skm.o skm_gdp.o -LD:/RCompile/CRANpkg/lib/4.4/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.4/RcppParallel/lib/x64 -ltbb -ltbbmalloc -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_10_08_01_50_00_15188/RtmpGK6wIT/R.INSTALL1c3909c953e5/skm/src'
make[1]: Entering directory '/d/temp/2025_10_08_01_50_00_15188/RtmpGK6wIT/R.INSTALL1c3909c953e5/skm/src'
make[1]: Leaving directory '/d/temp/2025_10_08_01_50_00_15188/RtmpGK6wIT/R.INSTALL1c3909c953e5/skm/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-skm/00new/skm/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'skm' as skm_0.1.5.4.zip
* DONE (skm)