* using log directory 'd:/Rcompile/CRANpkg/local/4.4/shinyMixR.Rcheck' * using R version 4.4.3 (2025-02-28 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'shinyMixR/DESCRIPTION' ... OK * this is package 'shinyMixR' version '0.5.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'shinyMixR' can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-oldrel-windows-x86_64/shinyMixR-00install.html' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s] OK * checking whether the package can be loaded with stated dependencies ... [2s] OK * checking whether the package can be unloaded cleanly ... [2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... WARNING Missing or unexported objects: 'nlmixr2::ini' 'nlmixr2::nlmixr' 'nlmixr2::nlmixr2' 'nlmixr2::tableControl' * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [12s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [4s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [17s] ERROR Running 'testthat.R' [17s] Running the tests in 'tests/testthat.R' failed. Complete output: > # see https://github.com/rstudio/shinytest2/issues/351 > options(chromote.timeout = 120) > > library(testthat) > library(shinyMixR) Loading required package: shiny Loading required package: ggplot2 > library(nlmixr2) ── Attaching packages ───────────────────────────────────────── nlmixr2 4.0.0 ── ✔ lotri 1.0.0 ✔ nlmixr2plot 3.0.2 ✔ nlmixr2data 2.0.9 ✔ rxode2 4.0.0 ✔ nlmixr2est 4.0.0 ✔ xpose.nlmixr2 0.4.1 ✔ nlmixr2extra 3.0.2 ── Optional Packages Loaded/Ignored ─────────────────────────── nlmixr2 4.0.0 ── ✔ shinyMixR ✖ monolix2rx ✔ xpose.nlmixr2 ✖ nlmixr2lib ✖ babelmixr2 ✖ nlmixr2rpt ✖ ggPMX ✖ nonmem2rx ── Conflicts ───────────────────────────────────────────── nlmixr2conflicts() ── ✖ rxode2::boxCox() masks nlmixr2est::boxCox() ✖ rxode2::yeoJohnson() masks nlmixr2est::yeoJohnson() > > test_check("shinyMixR") [ FAIL 1 | WARN 1 | SKIP 11 | PASS 56 ] ══ Skipped tests (11) ══════════════════════════════════════════════════════════ • On CRAN (11): 'test-module_dataexplore.R:3:3', 'test-module_metadata.R:3:3', 'test-module_report.R:4:3', 'test-module_run.R:3:3', 'test-module_script.R:3:3', 'test-module_settings.R:3:3', 'test-run_nmx.R:3:3', 'test-run_shinymixr.R:3:3', 'test-shinymixr-01-model-run1.R:8:3', 'test-shinymixr-02-parameter-table.R:6:3', 'test-shinymixr-03-create-newmodel.R:6:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-update_inits.R:9:3'): update_inits works as expected ─────────── Error: 'nlmixr2' is not an exported object from 'namespace:nlmixr2' Backtrace: ▆ 1. └─shinyMixR::update_inits(...) at test-update_inits.R:9:3 [ FAIL 1 | WARN 1 | SKIP 11 | PASS 56 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [8s] OK * checking PDF version of manual ... [19s] OK * checking HTML version of manual ... [7s] OK * DONE Status: 1 ERROR, 1 WARNING