• using R version 4.4.3 (2025-02-28 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 13.3.0     GNU Fortran (GCC) 13.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'sf/DESCRIPTION' ... OK
• this is package 'sf' version '1.0-22'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'sf' can be installed ... OK See the install log for details.
• used C++ compiler: 'g++.exe (GCC) 13.3.0'
• checking installed package size ... NOTE   installed size is 123.4Mb   sub-directories of 1Mb or more:     doc 12.6Mb     gdal 3.0Mb     libs 94.2Mb     proj 9.0Mb     sqlite 1.5Mb
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s] OK
• checking whether the package can be unloaded cleanly ... [1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s] OK
• checking loading without being on the library search path ... [1s] OK
• checking whether startup messages can be suppressed ... [1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [29s] OK
• checking Rd files ... [3s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compiled code ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [44s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [164s] ERROR   Running 'aggregate.R' [2s]   Comparing 'aggregate.Rout' to 'aggregate.Rout.save' ... OK   Running 'cast.R' [2s]   Comparing 'cast.Rout' to 'cast.Rout.save' ... OK   Running 'crs.R' [2s]   Comparing 'crs.Rout' to 'crs.Rout.save' ... OK   Running 'dist.R' [2s]   Comparing 'dist.Rout' to 'dist.Rout.save' ... OK   Running 'dplyr.R' [5s]   Comparing 'dplyr.Rout' to 'dplyr.Rout.save' ... OK   Running 'empty.R' [1s]   Comparing 'empty.Rout' to 'empty.Rout.save' ... OK   Running 'full.R' [2s]   Comparing 'full.Rout' to 'full.Rout.save' ... OK   Running 'gdal_geom.R' [2s]   Comparing 'gdal_geom.Rout' to 'gdal_geom.Rout.save' ... OK   Running 'geos.R' [38s]   Comparing 'geos.Rout' to 'geos.Rout.save' ... OK   Running 'graticule.R' [5s]   Comparing 'graticule.Rout' to 'graticule.Rout.save' ... OK   Running 'grid.R' [2s]   Comparing 'grid.Rout' to 'grid.Rout.save' ... OK   Running 'maps.R' [3s]   Comparing 'maps.Rout' to 'maps.Rout.save' ... OK   Running 'plot.R' [12s]   Comparing 'plot.Rout' to 'plot.Rout.save' ... OK   Running 'read.R' [4s]   Comparing 'read.Rout' to 'read.Rout.save' ... OK   Running 'roundtrip.R' [3s]   Comparing 'roundtrip.Rout' to 'roundtrip.Rout.save' ... OK   Running 's2.R' [3s]   Comparing 's2.Rout' to 's2.Rout.save' ... OK   Running 'sample.R' [1s]   Comparing 'sample.Rout' to 'sample.Rout.save' ... OK   Running 'sfc.R' [17s]   Comparing 'sfc.Rout' to 'sfc.Rout.save' ... OK   Running 'sfg.R' [1s]   Comparing 'sfg.Rout' to 'sfg.Rout.save' ... OK   Running 'spatstat.R' [6s]   Comparing 'spatstat.Rout' to 'spatstat.Rout.save' ... OK   Running 'stars.R' [6s]   Running 'testthat.R' [36s]   Running 'units.R' [1s]   Comparing 'units.Rout' to 'units.Rout.save' ... OK   Running 'wkb.R' [2s]   Comparing 'wkb.Rout' to 'wkb.Rout.save' ... OK Running the tests in 'tests/stars.R' failed. Complete output:   > suppressPackageStartupMessages(library(sf))   >   > tif = system.file("tif/geomatrix.tif", package = "sf")   >   > gdal_metadata(tif)   [1] "AREA_OR_POINT=Point"   > gdal_metadata(tif, NA_character_)   [1] "IMAGE_STRUCTURE" "DERIVED_SUBDATASETS" ""   > try(gdal_metadata(tif, "wrongDomain"))   Error in gdal_metadata(tif, "wrongDomain") :     domain_item[1] not found in available metadata domains   > gdal_metadata(tif, c("IMAGE_STRUCTURE"))   $INTERLEAVE   [1] "BAND"      attr(,"class")   [1] "gdal_metadata"   > try(length(gdal_metadata(tif, c("DERIVED_SUBDATASETS")))) # fails on Fedora 26   [1] 2   >   > if (require(stars, quietly = TRUE)) {   + tif = system.file("tif/geomatrix.tif", package = "sf")   + r = read_stars(tif)   + d = (st_dimensions(r))   + gt = c(1841001.75, 1.5, -5, 1144003.25, -5, -1.5)   + x1 = st_as_sfc(d, as_points = TRUE, use_cpp = TRUE, geotransform = gt)   + x2 = st_as_sfc(d, as_points = TRUE, use_cpp = FALSE, geotransform = gt)   + print(identical(x1, x2))   + y1 = st_as_sfc(d, as_points = FALSE, use_cpp = TRUE, geotransform = gt)   + y2 = st_as_sfc(d, as_points = FALSE, use_cpp = FALSE, geotransform = gt)   + print(identical(y1, y2))   +   + # rectilinear grid:   + m = matrix(1:20, nrow = 5, ncol = 4)   + x = c(0,0.5,1,2,4,5)   + y = c(0.3,0.5,1,2,2.2)   + r = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y, .raster = c("x", "y")))   + print(st_as_sfc(st_dimensions(r), as_points = TRUE))   + print(st_as_sfc(st_dimensions(r), as_points = FALSE))   +   + # curvilinear grid:   + lon = st_as_stars(matrix(1:5, 4, 5, byrow = TRUE))   + lat = st_as_stars(matrix(1:4, 4, 5))   + ll = c(X1 = lon, X2 = lat)   + curv = st_as_stars(st_as_stars(t(m)), curvilinear = setNames(ll, c("X1", "X2")))   + print(st_as_sfc(st_dimensions(curv), as_points = TRUE))   + print(st_as_sfc(st_dimensions(curv), as_points = FALSE))   +   + demo(nc, echo = FALSE, ask = FALSE)   + print(x <- st_rasterize(nc)) # default grid:   + print(p <- st_as_sf(x, as_points = FALSE)) # polygonize: follow raster boundaries   + print(p <- st_as_sf(x, as_points = FALSE, use_integer = TRUE)) # polygonize integers: follow raster boundaries   + print(try(p <- st_as_sf(x, as_points = TRUE))) # polygonize: contour, requies GDAL >= 2.4.0   + if (utils::packageVersion("stars") >= "0.2-1") {   + write_stars(read_stars(tif), tempfile(fileext = ".tif"))   + write_stars(read_stars(tif, proxy = TRUE), tempfile(fileext = ".tif"))   + write_stars(read_stars(tif, proxy = TRUE), tempfile(fileext = ".tif"), chunk_size = c(200,200))   + na.tif = read_stars(system.file("tif/na.tif", package = "stars"))   + write_stars(na.tif, "na.tif")   + write_stars(na.tif, "na.tif", NA_value = -999)   + na.tif = read_stars(system.file("tif/na.tif", package = "stars"), NA_value = -999)   + write_stars(na.tif, "na.tif")   + write_stars(na.tif, "na.tif", NA_value = -999)   + na.tif = read_stars(system.file("tif/na.tif", package = "stars"), NA_value = -999, proxy = TRUE)   + write_stars(na.tif, "na.tif")   + write_stars(na.tif, "na.tif", NA_value = -999)   + }   + # https://github.com/mtennekes/tmap/issues/368   + if (utils::packageVersion("stars") > "0.4-0") {   + lc = system.file('tif/lc.tif', package = 'stars')   + if (lc != "") {   + r = read_stars(lc, RAT = "Land Cover Class")   + r <- droplevels(r)   + }   + }   + }   [1] TRUE   [1] TRUE   Geometry set for 20 features   Geometry type: POINT   Dimension: XY   Bounding box: xmin: 0.25 ymin: 0.4 xmax: 4.5 ymax: 2.1   CRS: NA   First 5 geometries:   POINT (0.25 0.4)   POINT (0.75 0.4)   POINT (1.5 0.4)   POINT (3 0.4)   POINT (4.5 0.4)   Geometry set for 20 features   Geometry type: POLYGON   Dimension: XY   Bounding box: xmin: 0 ymin: 0.3 xmax: 5 ymax: 2.2   CRS: NA   First 5 geometries:   POLYGON ((0 0.3, 0.5 0.3, 0.5 0.5, 0 0.5, 0 0.3))   POLYGON ((0.5 0.3, 1 0.3, 1 0.5, 0.5 0.5, 0.5 0...   POLYGON ((1 0.3, 2 0.3, 2 0.5, 1 0.5, 1 0.3))   POLYGON ((2 0.3, 4 0.3, 4 0.5, 2 0.5, 2 0.3))   POLYGON ((4 0.3, 5 0.3, 5 0.5, 4 0.5, 4 0.3))   Geometry set for 20 features   Geometry type: POINT   Dimension: XY   Bounding box: xmin: 1 ymin: 1 xmax: 5 ymax: 4   Geodetic CRS: WGS 84 (CRS84)   First 5 geometries:   POINT (1 1)   POINT (1 2)   POINT (1 3)   POINT (1 4)   POINT (2 1)   Geometry set for 20 features   Geometry type: POLYGON   Dimension: XY   Bounding box: xmin: 0.5 ymin: 0.5 xmax: 5.5 ymax: 4.5   Geodetic CRS: WGS 84 (CRS84)   First 5 geometries:   POLYGON ((0.5 0.5, 0.5 1.5, 1.5 1.5, 1.5 0.5, 0...   POLYGON ((0.5 1.5, 0.5 2.5, 1.5 2.5, 1.5 1.5, 0...   POLYGON ((0.5 2.5, 0.5 3.5, 1.5 3.5, 1.5 2.5, 0...   POLYGON ((0.5 3.5, 0.5 4.5, 1.5 4.5, 1.5 3.5, 0...   POLYGON ((1.5 0.5, 1.5 1.5, 2.5 1.5, 2.5 0.5, 1...   stars object with 2 dimensions and 12 attributes   attribute(s):                   Min. 1st Qu. Median Mean 3rd Qu. Max. NA's   AREA 0.042 0.108 0.142 1.451932e-01 0.181 0.241 30904   PERIMETER 0.999 1.461 1.716 1.786110e+00 2.004 3.640 30904   CNTY_ 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904   CNTY_ID 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904   FIPSNO 37001.000 37049.000 37101.000 3.710042e+04 37153.000 37199.000 30904   CRESS_ID 1.000 25.000 51.000 5.071206e+01 77.000 100.000 30904   BIR74 248.000 1323.000 2648.000 3.791637e+03 4139.000 21588.000 30904   SID74 0.000 3.000 5.000 7.891985e+00 10.000 44.000 30904   NWBIR74 1.000 297.000 844.000 1.246210e+03 1396.000 8027.000 30904   BIR79 319.000 1606.000 3108.000 4.852046e+03 5400.000 30757.000 30904   SID79 0.000 3.000 6.000 9.584098e+00 13.000 57.000 30904   NWBIR79 3.000 360.000 1058.000 1.604642e+03 1524.000 11631.000 30904   dimension(s):     from to offset delta refsys point x/y   x 1 461 -84.32 0.01925 NAD27 FALSE [x]   y 1 141 36.59 -0.01925 NAD27 FALSE [y]   Simple feature collection with 34097 features and 12 fields   Geometry type: POLYGON   Dimension: XY   Bounding box: xmin: -84.32385 ymin: 33.87563 xmax: -75.45034 ymax: 36.58965   Geodetic CRS: NAD27   First 10 features:       AREA PERIMETER CNTY_ CNTY_ID FIPSNO CRESS_ID BIR74 SID74 NWBIR74 BIR79   1 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   2 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   3 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   4 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   5 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   6 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   7 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   8 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   9 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   10 0.114 1.442 1825 1825 37009 5 1091 1 10 1364      SID79 NWBIR79 geometry   1 0 19 POLYGON ((-81.66757 36.5896...   2 0 19 POLYGON ((-81.64833 36.5896...   3 0 19 POLYGON ((-81.62908 36.5896...   4 0 19 POLYGON ((-81.60983 36.5896...   5 0 19 POLYGON ((-81.59058 36.5896...   6 0 19 POLYGON ((-81.57133 36.5896...   7 0 19 POLYGON ((-81.55208 36.5896...   8 0 19 POLYGON ((-81.53283 36.5896...   9 0 19 POLYGON ((-81.51359 36.5896...   10 0 19 POLYGON ((-81.49434 36.5896...   Simple feature collection with 34097 features and 12 fields   Geometry type: POLYGON   Dimension: XY   Bounding box: xmin: -84.32385 ymin: 33.87563 xmax: -75.45034 ymax: 36.58965   Geodetic CRS: NAD27   First 10 features:       AREA PERIMETER CNTY_ CNTY_ID FIPSNO CRESS_ID BIR74 SID74 NWBIR74 BIR79   1 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   2 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   3 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   4 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   5 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   6 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   7 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   8 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   9 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   10 0.114 1.442 1825 1825 37009 5 1091 1 10 1364      SID79 NWBIR79 geometry   1 0 19 POLYGON ((-81.66757 36.5896...   2 0 19 POLYGON ((-81.64833 36.5896...   3 0 19 POLYGON ((-81.62908 36.5896...   4 0 19 POLYGON ((-81.60983 36.5896...   5 0 19 POLYGON ((-81.59058 36.5896...   6 0 19 POLYGON ((-81.57133 36.5896...   7 0 19 POLYGON ((-81.55208 36.5896...   8 0 19 POLYGON ((-81.53283 36.5896...   9 0 19 POLYGON ((-81.51359 36.5896...   10 0 19 POLYGON ((-81.49434 36.5896...   Simple feature collection with 34097 features and 12 fields   Geometry type: POINT   Dimension: XY   Bounding box: xmin: -84.31423 ymin: 33.88525 xmax: -75.45997 ymax: 36.58003   Geodetic CRS: NAD27   First 10 features:       AREA PERIMETER CNTY_ CNTY_ID FIPSNO CRESS_ID BIR74 SID74 NWBIR74 BIR79   1 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   2 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   3 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   4 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   5 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   6 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   7 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   8 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   9 0.114 1.442 1825 1825 37009 5 1091 1 10 1364   10 0.114 1.442 1825 1825 37009 5 1091 1 10 1364      SID79 NWBIR79 geometry   1 0 19 POINT (-81.65795 36.58003)   2 0 19 POINT (-81.6387 36.58003)   3 0 19 POINT (-81.61945 36.58003)   4 0 19 POINT (-81.6002 36.58003)   5 0 19 POINT (-81.58096 36.58003)   6 0 19 POINT (-81.56171 36.58003)   7 0 19 POINT (-81.54246 36.58003)   8 0 19 POINT (-81.52321 36.58003)   9 0 19 POINT (-81.50396 36.58003)   10 0 19 POINT (-81.48471 36.58003)               >   > r = gdal_read(tif)   > gt = c(0,1,0,0,0,1)   > gdal_inv_geotransform(gt)   [1] 0 1 0 0 0 1   > rc = expand.grid(x=1:3, y = 1:3)   > #(xy = xy_from_colrow(rc, gt))   > #xy_from_colrow(xy, gt, inverse = TRUE)   > crs <- gdal_crs(tif)   >   > try(gdal_metadata("foo"))   [1] NA   > gdal_metadata(tif)   [1] "AREA_OR_POINT=Point"   >   > if (require(stars, quietly = TRUE)) {   + p = normalizePath(system.file("nc/ones.zarr.zip", package = "sf"))   + z = paste0('ZARR:/vsizip/"', p, '"/ones.zarr')   + gdal_utils("mdiminfo", z)   + cat("\n")   + print(read_stars(z, normalize_path = FALSE))   + print(read_mdim(z, normalize_path = FALSE))   + }   failed to open ZARR:/vsizip/"D:\RCompile\CRANpkg\lib\4.4\sf\nc\ones.zarr.zip"/ones.zarr   Error: Error opening data source   In addition: Warning message:   In CPL_gdalmdiminfo(source, options, oo, config_options) :     GDAL Error 1: Decompressor blosc not handled   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [80s] OK
• checking PDF version of manual ... [24s] OK
• checking HTML version of manual ... [18s] OK
• DONE

Status: 1 ERROR, 1 NOTE