• using R version 4.4.3 Patched (2026-02-12 r89426 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 13.3.0     GNU Fortran (GCC) 13.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'sequoia/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'sequoia' version '3.2.0'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'sequoia' can be installed ... OK See the install log for details.
• used C compiler: 'gcc.exe (GCC) 13.3.0'
• used Fortran compiler: 'GNU Fortran (GCC) 13.3.0'
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s] OK
• checking whether the package can be unloaded cleanly ... [1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s] OK
• checking loading without being on the library search path ... [1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [22s] OK
• checking Rd files ... [2s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compiled code ... OK
• checking usage of KIND in Fortran files ... OK
• checking sizes of PDF files under 'inst/doc' ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [38s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [94s] ERROR Error(s) in re-building vignettes: --- re-building 'PedComp.Rmd' using rmarkdown --- finished re-building 'PedComp.Rmd' --- re-building 'quick_start_example1.rmd' using rmarkdown --- finished re-building 'quick_start_example1.rmd' --- re-building 'vignette-age.Rmd' using rmarkdown ! Package pdftex.def Error: File `6c8f9a06c38130bbbf139bdd2deb5e5aff7cd654.pdf'  not found: using draft setting. Error: processing vignette 'vignette-age.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/sequoia.Rcheck/vign_test/sequoia/vignettes/vignette-age.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See vignette-age.log for more info. --- failed re-building 'vignette-age.Rmd' --- re-building 'vignette-main.Rmd' using rmarkdown ! Package pdftex.def Error: File `ea4d7d1b975ae0946ae43f69b0629983720da15a.pdf'  not found: using draft setting. Error: processing vignette 'vignette-main.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/sequoia.Rcheck/vign_test/sequoia/vignettes/vignette-main.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See vignette-main.log for more info. --- failed re-building 'vignette-main.Rmd' --- re-building 'flowchart.pdf.asis' using asis --- finished re-building 'flowchart.pdf.asis' --- re-building 'vignette_mtDNA.pdf.asis' using asis --- finished re-building 'vignette_mtDNA.pdf.asis' SUMMARY: processing the following files failed:   'vignette-age.Rmd' 'vignette-main.Rmd' Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [22s] OK
• checking HTML version of manual ... [14s] OK
• DONE

Status: 1 ERROR