• using R version 4.4.3 Patched (2026-02-12 r89426 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 13.3.0     GNU Fortran (GCC) 13.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'registr/DESCRIPTION' ... OK
• this is package 'registr' version '2.2.1'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'registr' can be installed ... OK See the install log for details.
• used C++ compiler: 'g++.exe (GCC) 13.3.0'
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s] OK
• checking whether the package can be unloaded cleanly ... [3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s] OK
• checking whether the namespace can be unloaded cleanly ... [4s] OK
• checking loading without being on the library search path ... [4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [14s] OK
• checking Rd files ... [1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compiled code ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [11s] ERROR Running examples in 'registr-Ex.R' failed The error most likely occurred in: > ### Name: gfpca_twoStep > ### Title: Generalized functional principal component analysis > ### Aliases: gfpca_twoStep > > ### ** Examples > > data(growth_incomplete) > > # estimate 2 FPCs > fpca_obj = gfpca_twoStep(Y = growth_incomplete, npc = 2, family = "gaussian") Using the first 2 FPCs which explain 73.8% of the (approximated) total variance. Error: 'mchol' is not an exported object from 'namespace:mgcv' Execution halted
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [398s] ERROR   Running 'testthat.R' [397s] Running the tests in 'tests/testthat.R' failed. Complete output:   > library(testthat)   > library(registr)   >   > test_check("registr")   Saving _problems/test-gfpca_twoStep-53.R   Saving _problems/test-gfpca_twoStep-84.R   Saving _problems/test-gfpca_twoStep-108.R   Saving _problems/test-gfpca_twoStep-127.R   Saving _problems/test-gfpca_twoStep-146.R   Saving _problems/test-gfpca_twoStep-164.R   Saving _problems/test-gfpca_twoStep-172.R   Saving _problems/test-plot_fpca-12.R   Saving _problems/test-register_fpca-13.R   Saving _problems/test-register_fpca-29.R   Saving _problems/test-register_fpca-41.R   Saving _problems/test-register_fpca-49.R   Saving _problems/test-register_fpca-57.R   [ FAIL 13 | WARN 6 | SKIP 6 | PASS 166 ]      ══ Skipped tests (6) ═══════════════════════════════════════════════════════════   • On CRAN (6): 'test-register_fpca.R:61:3', 'test-register_fpca.R:92:3',     'test-register_fpca.R:110:3', 'test-register_fpca.R:123:3',     'test-register_fpca.R:138:3', 'test-register_fpca.R:182:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-gfpca_twoStep.R:53:2'): gfpca_twoStep (Gaussian) output is a list with non-null items and class fpca ──   Error: 'mchol' is not an exported object from 'namespace:mgcv'   Backtrace:       ▆    1. └─registr::gfpca_twoStep(Y, npc = 2) at test-gfpca_twoStep.R:53:9    2. └─gamm4::gamm4(...)   ── Error ('test-gfpca_twoStep.R:84:2'): gfpca_twoStep (Gaussian) output has correct number of dimensions ──   Error: 'mchol' is not an exported object from 'namespace:mgcv'   Backtrace:       ▆    1. └─registr::gfpca_twoStep(Y, npc = 2, Kt = Kt, index_significantDigits = 4) at test-gfpca_twoStep.R:84:9    2. └─gamm4::gamm4(...)   ── Error ('test-gfpca_twoStep.R:107:2'): gfpca_twoStep (Binomial) output has correct number of dimensions ──   Error: 'mchol' is not an exported object from 'namespace:mgcv'   Backtrace:       ▆    1. └─registr::gfpca_twoStep(...) at test-gfpca_twoStep.R:107:9    2. └─gamm4::gamm4(...)   ── Error ('test-gfpca_twoStep.R:126:2'): gfpca_twoStep (Gamma) output has correct number of dimensions ──   Error: 'mchol' is not an exported object from 'namespace:mgcv'   Backtrace:       ▆    1. └─registr::gfpca_twoStep(...) at test-gfpca_twoStep.R:126:9    2. └─gamm4::gamm4(...)   ── Error ('test-gfpca_twoStep.R:145:2'): gfpca_twoStep (Poisson) output has correct number of dimensions ──   Error: 'mchol' is not an exported object from 'namespace:mgcv'   Backtrace:       ▆    1. └─registr::gfpca_twoStep(...) at test-gfpca_twoStep.R:145:9    2. └─gamm4::gamm4(...)   ── Error ('test-gfpca_twoStep.R:164:2'): gfpca_twoStep (Gaussian) returns a correct knots vector when periodic = TRUE ──   Error: 'mchol' is not an exported object from 'namespace:mgcv'   Backtrace:       ▆    1. └─registr::gfpca_twoStep(...) at test-gfpca_twoStep.R:164:9    2. └─gamm4::gamm4(...)   ── Error ('test-gfpca_twoStep.R:172:2'): gfpca_twoStep (Gaussian) has correct number of dimensions when applied on incomplete curves ──   Error: 'mchol' is not an exported object from 'namespace:mgcv'   Backtrace:       ▆    1. └─registr::gfpca_twoStep(Y, npc = 2, Kt = Kt, index_significantDigits = 4) at test-gfpca_twoStep.R:172:9    2. └─gamm4::gamm4(...)   ── Error ('test-plot_fpca.R:12:2'): plot.fpca returns a cowplot object with classes 'gg' and 'ggplot' for all FPCA functions ──   Error: 'mchol' is not an exported object from 'namespace:mgcv'   Backtrace:       ▆    1. └─registr::gfpca_twoStep(Y = growth_incomplete, npc = 2, family = "gaussian") at test-plot_fpca.R:12:9    2. └─gamm4::gamm4(...)   ── Error ('test-register_fpca.R:11:2'): code only accepts supported family of distributions ──   Error: 'mchol' is not an exported object from 'namespace:mgcv'   Backtrace:       ▆    1. ├─testthat::expect_warning(...) at test-register_fpca.R:11:9    2. │ └─testthat:::quasi_capture(...)    3. │ ├─testthat (local) .capture(...)    4. │ │ └─base::withCallingHandlers(...)    5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))    6. └─registr::register_fpca(...)    7. └─registr::gfpca_twoStep(...)    8. └─gamm4::gamm4(...)   ── Error ('test-register_fpca.R:27:2'): registering binary data throws no errors ──   Error: 'mchol' is not an exported object from 'namespace:mgcv'   Backtrace:       ▆    1. ├─testthat::expect_warning(...) at test-register_fpca.R:27:9    2. │ └─testthat:::quasi_capture(...)    3. │ ├─testthat (local) .capture(...)    4. │ │ └─base::withCallingHandlers(...)    5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))    6. └─registr::register_fpca(...)    7. └─registr::gfpca_twoStep(...)    8. └─gamm4::gamm4(...)   ── Error ('test-register_fpca.R:39:2'): registering gaussian data throws no errors ──   Error: 'mchol' is not an exported object from 'namespace:mgcv'   Backtrace:       ▆    1. ├─testthat::expect_warning(...) at test-register_fpca.R:39:9    2. │ └─testthat:::quasi_capture(...)    3. │ ├─testthat (local) .capture(...)    4. │ │ └─base::withCallingHandlers(...)    5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))    6. └─registr::register_fpca(...)    7. └─registr::gfpca_twoStep(...)    8. └─gamm4::gamm4(...)   ── Error ('test-register_fpca.R:47:2'): registering gamma data throws no errors ──   Error: 'mchol' is not an exported object from 'namespace:mgcv'   Backtrace:       ▆    1. ├─testthat::expect_warning(...) at test-register_fpca.R:47:9    2. │ └─testthat:::quasi_capture(...)    3. │ ├─testthat (local) .capture(...)    4. │ │ └─base::withCallingHandlers(...)    5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))    6. └─registr::register_fpca(...)    7. └─registr::gfpca_twoStep(...)    8. └─gamm4::gamm4(...)   ── Error ('test-register_fpca.R:55:2'): registering poisson data throws no errors ──   Error: 'mchol' is not an exported object from 'namespace:mgcv'   Backtrace:       ▆    1. ├─testthat::expect_warning(...) at test-register_fpca.R:55:9    2. │ └─testthat:::quasi_capture(...)    3. │ ├─testthat (local) .capture(...)    4. │ │ └─base::withCallingHandlers(...)    5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))    6. └─registr::register_fpca(...)    7. └─registr::gfpca_twoStep(...)    8. └─gamm4::gamm4(...)      [ FAIL 13 | WARN 6 | SKIP 6 | PASS 166 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [159s] OK
• checking PDF version of manual ... [16s] OK
• checking HTML version of manual ... [8s] OK
• DONE

Status: 2 ERRORs, 1 NOTE