- using R version 4.4.3 (2025-02-28 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'rcatfish/DESCRIPTION' ... OK
- this is package 'rcatfish' version '1.0.0'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'rcatfish' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s] OK
- checking whether the package can be loaded with stated dependencies ... [2s] OK
- checking whether the package can be unloaded cleanly ... [2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s] OK
- checking loading without being on the library search path ... [2s] OK
- checking whether startup messages can be suppressed ... [3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [9s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking R/sysdata.rda ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [17s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [22s] ERROR
Running 'testthat.R' [22s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> test_check("rcatfish")
Loading required package: rcatfish
Welcome to rcatfish: Access to the California Academy of Sciences Eschmeyer's Catalog of Fishes
Catalog of Fishes version of 2 Feb 2026 (Continuously updated since the early 1980s, around the turn of the month.)
If you use this package please cite both:
This R package: Borstein, S.R., Dominy, B.E. & O'Meara, B.C.(2026) rcatifsh: An R interface to the California Academy of Sciences Eschmeyer's Catalog of Fishes. Available at:https://github.com/sborstein/rcatfish.
Catalog of Fishes: Fricke, R., Eschmeyer, W.N. & van der Laan, R. 2026. Catalog of Fishes: Genera, Species, References. Available at: https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp. Electronic version accessed 04 02 2026.
openSSL backend for curl is required for the Windows version of this package, but it not detected as being active. Please see the vignette on how to configure curl with openSSL for this function to work. You can access the vignette with the following: vignette('rcatfish').Saving _problems/test_rcatfish_updates-9.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 15 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_rcatfish_updates.R:9:7'): Test that rcatfish_updates returns proper definitions ──
Expected `names(updates.hit)` to be identical to `c(...)`.
Differences:
Lengths differ: 5 is not 6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 15 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [2s] OK
- checking PDF version of manual ... [18s] OK
- checking HTML version of manual ... [2s] OK
- DONE
Status: 1 ERROR