- using R version 4.4.3 (2025-02-28 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'preregr/DESCRIPTION' ... OK
- this is package 'preregr' version '0.2.9'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'preregr' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s] OK
- checking whether the package can be loaded with stated dependencies ... [0s] OK
- checking whether the package can be unloaded cleanly ... [0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s] OK
- checking whether the namespace can be unloaded cleanly ... [1s] OK
- checking loading without being on the library search path ... [1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [7s] OK
- checking Rd files ... [1s] NOTE
checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
20 | the (pre)registration form specification (in {preregr} format), see the
| ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
23 | specification, or a loaded or imported {preregr} (pre)registration form.
| ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
26 | For an introduction to working with {preregr} (pre)registrations,
| ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
75 | This function creates an R Markdown template from a {preregr}
| ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
77 | Sheet holding the (pre)registration form specification (in {preregr}
| ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
81 | specification, or a loaded or imported {preregr} (pre)registration form.
| ^
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [12s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [8s] OK
Running 'testthat.R' [8s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [53s] ERROR
Error(s) in re-building vignettes:
--- re-building 'creating_form_from_spreadsheet.Rmd' using rmarkdown
--- finished re-building 'creating_form_from_spreadsheet.Rmd'
--- re-building 'creating_prereg_form.Rmd' using rmarkdown
--- finished re-building 'creating_prereg_form.Rmd'
--- re-building 'form_OSFprereg_v1.Rmd' using rmarkdown
--- finished re-building 'form_OSFprereg_v1.Rmd'
--- re-building 'form_OSFqual1_v1.Rmd' using rmarkdown
--- finished re-building 'form_OSFqual1_v1.Rmd'
--- re-building 'form_genSysRev_v1.Rmd' using rmarkdown
--- finished re-building 'form_genSysRev_v1.Rmd'
--- re-building 'form_generalPurpose_v1.Rmd' using rmarkdown
--- finished re-building 'form_generalPurpose_v1.Rmd'
--- re-building 'form_generalPurpose_v1_1.Rmd' using rmarkdown
--- finished re-building 'form_generalPurpose_v1_1.Rmd'
--- re-building 'form_inclDivAddon_v0_1.Rmd' using rmarkdown
--- finished re-building 'form_inclDivAddon_v0_1.Rmd'
--- re-building 'form_inclSysRev_v0_92.Rmd' using rmarkdown
--- finished re-building 'form_inclSysRev_v0_92.Rmd'
--- re-building 'form_prereg2D_v1.Rmd' using rmarkdown
--- finished re-building 'form_prereg2D_v1.Rmd'
--- re-building 'form_preregQE_v0_93.Rmd' using rmarkdown
--- finished re-building 'form_preregQE_v0_93.Rmd'
--- re-building 'form_preregQE_v0_94.Rmd' using rmarkdown
--- finished re-building 'form_preregQE_v0_94.Rmd'
--- re-building 'form_preregQE_v0_95.Rmd' using rmarkdown
--- finished re-building 'form_preregQE_v0_95.Rmd'
--- re-building 'form_prpQuant_v1.Rmd' using rmarkdown
--- finished re-building 'form_prpQuant_v1.Rmd'
--- re-building 'importing_form_from_url.Rmd' using rmarkdown
Quitting from importing_form_from_url.Rmd:19-24 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
▆
1. └─preregr::import_from_html("https://preregr.opens.science/articles/creating_prereg_form.html")
2. ├─rvest::read_html(x = x)
3. └─xml2:::read_html.default(x = x)
4. ├─base::suppressWarnings(...)
5. │ └─base::withCallingHandlers(...)
6. ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options)
7. └─xml2:::read_xml.character(...)
8. └─xml2:::read_xml.connection(...)
9. ├─base::open(x, "rb")
10. └─base::open.connection(x, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'importing_form_from_url.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'importing_form_from_url.Rmd'
--- re-building 'importing_pregistration_from_url.Rmd' using rmarkdown
Quitting from importing_pregistration_from_url.Rmd:21-24 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
▆
1. └─preregr::import_from_html("https://preregr.opens.science/articles/specifying_prereg_content.html")
2. ├─rvest::read_html(x = x)
3. └─xml2:::read_html.default(x = x)
4. ├─base::suppressWarnings(...)
5. │ └─base::withCallingHandlers(...)
6. ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options)
7. └─xml2:::read_xml.character(...)
8. └─xml2:::read_xml.connection(...)
9. ├─base::open(x, "rb")
10. └─base::open.connection(x, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'importing_pregistration_from_url.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'importing_pregistration_from_url.Rmd'
--- re-building 'preregr.Rmd' using rmarkdown
--- finished re-building 'preregr.Rmd'
--- re-building 'rmd_template_from_form.Rmd' using rmarkdown
--- finished re-building 'rmd_template_from_form.Rmd'
--- re-building 'specifying_prereg_content.Rmd' using rmarkdown
--- finished re-building 'specifying_prereg_content.Rmd'
SUMMARY: processing the following files failed:
'importing_form_from_url.Rmd' 'importing_pregistration_from_url.Rmd'
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [20s] OK
- checking HTML version of manual ... [9s] OK
- DONE
Status: 1 ERROR, 1 NOTE