• using R version 4.5.3 (2026-03-11 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.3.0     GNU Fortran (GCC) 14.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'pprof/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'pprof' version '1.0.3'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'pprof' can be installed ... OK See the install log for details.
• used C++ compiler: 'g++.exe (GCC) 14.3.0'
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [6s] OK
• checking whether the package can be loaded with stated dependencies ... [5s] OK
• checking whether the package can be unloaded cleanly ... [6s] OK
• checking whether the namespace can be loaded with stated dependencies ... [5s] OK
• checking whether the namespace can be unloaded cleanly ... [6s] OK
• checking loading without being on the library search path ... [7s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [28s] OK
• checking Rd files ... [2s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... INFO GNU make is a SystemRequirements.
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compiled code ... OK
• checking examples ... [13s] ERROR Running examples in 'pprof-Ex.R' failed The error most likely occurred in: > ### Name: SM_output.logis_cre > ### Title: Calculate direct/indirect standardized ratios/rates from a > ### fitted 'logis_cre' object > ### Aliases: SM_output.logis_cre > > ### ** Examples > > data(ExampleDataBinary) > outcome <- ExampleDataBinary$Y > covar <- ExampleDataBinary$Z > ProvID <- ExampleDataBinary$ProvID > data <- data.frame(outcome, ProvID, covar) > outcome.char <- colnames(data)[1] > ProvID.char <- colnames(data)[2] > wb.char <- c("z1", "z2") > other.char <- c("z3", "z4", "z5") > fit_cre <- logis_cre(data = data, Y.char = outcome.char, ProvID.char = ProvID.char, + wb.char = wb.char, other.char = other.char)
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [13s] ERROR   Running 'testthat.R' [12s] Running the tests in 'tests/testthat.R' failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(pprof)   >   > test_check("pprof")   Input format: Y, Z, and ProvID.   Input format: Y, Z, and ProvID.   Input format: Y, Z, and ProvID.   3 out of 100 remaining providers with no events.   0 out of 100 remaining providers with all events.   After screening, 38.77% of all records exhibit occurrences of events (Y = 1)   Implementing SerBIN algorithm (Rcpp) for fixed provider effects model ...   Iter 1: Minimum criterion across all checks is 5.022e-01;   Iter 2: Minimum criterion across all checks is 1.422e-01;   Iter 3: Minimum criterion across all checks is 3.528e-02;   Iter 4: Minimum criterion across all checks is 5.671e-03;   Iter 5: Minimum criterion across all checks is 1.214e-03;   Iter 6: Minimum criterion across all checks is 2.151e-04;   Iter 7: Minimum criterion across all checks is 6.647e-05;   Iter 8: Minimum criterion across all checks is 7.565e-06;   serBIN (Rcpp) algorithm converged after 8 iterations!   Setting levels: control = 0, case = 1   Setting direction: controls < cases   Input format: Y, Z, and ProvID.
• checking PDF version of manual ... [19s] OK
• checking HTML version of manual ... [9s] OK
• DONE

Status: 2 ERRORs