* installing *source* package 'pacotest' ...
** package 'pacotest' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2025_10_08_01_50_00_15188/Rtmpc5rxAJ/R.INSTALL26d5c66b8fc2/pacotest/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c EqualCop.cpp -o EqualCop.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from ../inst/include/pacotest_header.h:32,
from EqualCop.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c EqualCorr.cpp -o EqualCorr.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from ../inst/include/pacotest_header.h:32,
from EqualCorr.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Grouping.cpp -o Grouping.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from ../inst/include/pacotest_header.h:32,
from Grouping.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
Grouping.cpp: In function 'void TreeGrouping(const arma::mat&, const arma::mat&, arma::umat&, arma::uvec&, int, int, double, arma::uvec&, arma::uvec&, arma::vec&)':
Grouping.cpp:343:8: warning: 'eT arma::Mat<eT>::max(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]' is deprecated: use .index_max() with ind2sub() instead [-Wdeprecated-declarations]
343 | a.max(SplitVariable(0),SplitQuantile(0));
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:201:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:548:71: note: declared here
548 | [[deprecated("use .index_max() with ind2sub() instead")]] inline eT max(uword& row_of_max_val, uword& col_of_max_val) const;
| ^~~
Grouping.cpp:429:13: warning: 'eT arma::Mat<eT>::max(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]' is deprecated: use .index_max() with ind2sub() instead [-Wdeprecated-declarations]
429 | a1.max(SplitVariable(1),SplitQuantile(1));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:692:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7900:1: note: declared here
7900 | Mat<eT>::max(uword& row_of_max_val, uword& col_of_max_val) const
| ^~~~~~~
Grouping.cpp:496:13: warning: 'eT arma::Mat<eT>::max(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]' is deprecated: use .index_max() with ind2sub() instead [-Wdeprecated-declarations]
496 | a2.max(SplitVariable(2),SplitQuantile(2));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7900:1: note: declared here
7900 | Mat<eT>::max(uword& row_of_max_val, uword& col_of_max_val) const
| ^~~~~~~
Grouping.cpp:546:14: warning: 'eT arma::Mat<eT>::max(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]' is deprecated: use .index_max() with ind2sub() instead [-Wdeprecated-declarations]
546 | b.max(SplitVariable(3),SplitQuantile(3));
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7900:1: note: declared here
7900 | Mat<eT>::max(uword& row_of_max_val, uword& col_of_max_val) const
| ^~~~~~~
Grouping.cpp:584:14: warning: 'eT arma::Mat<eT>::max(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]' is deprecated: use .index_max() with ind2sub() instead [-Wdeprecated-declarations]
584 | b.max(SplitVariable(3),SplitQuantile(3));
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7900:1: note: declared here
7900 | Mat<eT>::max(uword& row_of_max_val, uword& col_of_max_val) const
| ^~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from ../inst/include/pacotest_header.h:32,
from ../inst/include/pacotest.h:1,
from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c VecIndepTest.cpp -o VecIndepTest.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from ../inst/include/pacotest_header.h:32,
from VecIndepTest.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
gcc -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pacotest-init.c -o pacotest-init.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pacotestFunctions.cpp -o pacotestFunctions.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from ../inst/include/pacotest_header.h:32,
from pacotestFunctions.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
pacotestFunctions.cpp: In function 'Rcpp::List CCC(arma::mat, arma::mat, double, double, double, double, double, arma::mat&, Rcpp::DataFrame, Rcpp::List, double, double, double, double)':
pacotestFunctions.cpp:98:24: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
98 | if (arma::is_finite(penaltyLevel) && arma::is_finite(penaltyPower) && arma::is_finite(Gamma0Partition))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:518:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
pacotestFunctions.cpp:98:57: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
98 | if (arma::is_finite(penaltyLevel) && arma::is_finite(penaltyPower) && arma::is_finite(Gamma0Partition))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
pacotestFunctions.cpp:98:90: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
98 | if (arma::is_finite(penaltyLevel) && arma::is_finite(penaltyPower) && arma::is_finite(Gamma0Partition))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pacotest_R_HelpingFunctions.cpp -o pacotest_R_HelpingFunctions.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from ../inst/include/pacotest_header.h:32,
from pacotest_R_HelpingFunctions.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -shared -s -static-libgcc -o pacotest.dll tmp.def EqualCop.o EqualCorr.o Grouping.o RcppExports.o VecIndepTest.o pacotest-init.o pacotestFunctions.o pacotest_R_HelpingFunctions.o -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_10_08_01_50_00_15188/Rtmpc5rxAJ/R.INSTALL26d5c66b8fc2/pacotest/src'
make[1]: Entering directory '/d/temp/2025_10_08_01_50_00_15188/Rtmpc5rxAJ/R.INSTALL26d5c66b8fc2/pacotest/src'
make[1]: Leaving directory '/d/temp/2025_10_08_01_50_00_15188/Rtmpc5rxAJ/R.INSTALL26d5c66b8fc2/pacotest/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-pacotest/00new/pacotest/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'pacotest' as pacotest_0.4.2.zip
* DONE (pacotest)