* installing *source* package 'ondisc' ...
** this is package 'ondisc' version '1.3.5'
** package 'ondisc' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.3.0'
make[1]: Entering directory '/d/temp/2026_06_18_15_17_39_23840/RtmpkRwfbe/R.INSTALL307463d07177/ondisc/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rhdf5lib/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rhdf5lib/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c h5_import_data_functs.cpp -o h5_import_data_functs.o
h5_import_data_functs.cpp: In function 'void decrement_vector(Rcpp::IntegerVector)':
h5_import_data_functs.cpp:19:36: warning: comparison of integer expressions of different signedness: 'long long unsigned int' and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
19 | for (unsigned long long i = 0; i < v.size(); i ++) v[i] --;
| ~~^~~~~~~~~~
h5_import_data_functs.cpp: In function 'void add_value_to_vector(Rcpp::IntegerVector, int)':
h5_import_data_functs.cpp:26:36: warning: comparison of integer expressions of different signedness: 'long long unsigned int' and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
26 | for (unsigned long long i = 0; i < v.size(); i ++) v[i] += to_add;
| ~~^~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rhdf5lib/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c h5_initialize_functs.cpp -o h5_initialize_functs.o
h5_initialize_functs.cpp: In function 'void create_odm_r_matrix_cpp(const std::string&, Rcpp::StringVector, int, int, int, int, int, const std::vector<int>&, const std::vector<int>&, const std::vector<int>&)':
h5_initialize_functs.cpp:156:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
156 | for (int i = 0; i < p.size(); i ++) row_ptr[i] = static_cast<unsigned long long>(p[i]);
| ~~^~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rhdf5lib/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c h5_load_row.cpp -o h5_load_row.o
h5_load_row.cpp: In function 'Rcpp::IntegerVector load_row_cpp(const std::string&, SEXP, int, int)':
h5_load_row.cpp:15:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
15 | for (int i = 0; i < m_x.size(); i ++) out[m_j[i]] = m_x[i];
| ~~^~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rhdf5lib/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c h5_simple_read.cpp -o h5_simple_read.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rhdf5lib/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sceptre_functs.cpp -o sceptre_functs.o
sceptre_functs.cpp: In function 'Rcpp::IntegerVector threshold_count_matrix_cpp(const std::string&, SEXP, int, int)':
sceptre_functs.cpp:14:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
14 | for (int k = 0; k < x.size(); k ++) if (x[k] >= threshold) n_gte_threshold ++;
| ~~^~~~~~~~~~
sceptre_functs.cpp:16:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
16 | for (int k = 0; k < x.size(); k ++) if (x[k] >= threshold) out[counter ++] = j[k] + 1;
| ~~^~~~~~~~~~
sceptre_functs.cpp: In function 'void load_nonzero_posits_odm(const std::string&, SEXP, int, std::vector<bool>&, std::vector<bool>&, std::vector<int>&)':
sceptre_functs.cpp:26:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<bool>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
26 | for (int k = 0; k < y_orig.size(); k ++) y_orig[k] = false;
| ~~^~~~~~~~~~~~~~~
sceptre_functs.cpp:27:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
27 | for (int k = 0; k < j.size(); k ++) y_orig[j[k]] = true;
| ~~^~~~~~~~~~
sceptre_functs.cpp:28:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<bool>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
28 | for (int k = 0; k < y_sub.size(); k++) y_sub[k] = y_orig[cells_in_use_zero_idx[k]];
| ~~^~~~~~~~~~~~~~
sceptre_functs.cpp: In function 'Rcpp::List compute_nt_nonzero_matrix_and_n_ok_pairs_ondisc(const std::string&, SEXP, int, int, int, Rcpp::List, Rcpp::List, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, Rcpp::IntegerVector)':
sceptre_functs.cpp:45:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
45 | for (int i = 0; i < cells_in_use_zero_idx.size(); i ++) cells_in_use_zero_idx[i] = cells_in_use[i] - 1;
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sceptre_functs.cpp:70:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<bool>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
70 | for (int k = 0; k < y_sub.size(); k++) if (y_sub[k]) n_nonzero_tot[row_idx] ++;
| ~~^~~~~~~~~~~~~~
sceptre_functs.cpp: In function 'Rcpp::IntegerMatrix compute_n_trt_cells_matrix_ondisc(const std::string&, SEXP, int, int, int, Rcpp::List, Rcpp::IntegerVector)':
sceptre_functs.cpp:105:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
105 | for (int i = 0; i < cells_in_use_zero_idx.size(); i ++) cells_in_use_zero_idx[i] = cells_in_use[i] - 1;
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sceptre_functs.cpp: In function 'Rcpp::List compute_n_ok_pairs_ondisc(const std::string&, SEXP, int, int, int, Rcpp::List, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, Rcpp::IntegerVector, Rcpp::IntegerVector)':
sceptre_functs.cpp:139:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
139 | for (int i = 0; i < cells_in_use_zero_idx.size(); i ++) cells_in_use_zero_idx[i] = cells_in_use[i] - 1;
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sceptre_functs.cpp:152:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<bool>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
152 | for (int k = 0; k < y_sub.size(); k++) if (y_sub[k]) n_nonzero_tot ++;
| ~~^~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rhdf5lib/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c shared_functs.cpp -o shared_functs.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rhdf5lib/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utility_functs.cpp -o utility_functs.o
utility_functs.cpp: In function 'void print_ull_vect(SEXP)':
utility_functs.cpp:15:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<long long unsigned int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
15 | for (int i = 0; i < (*v).size(); i ++) {
| ~~^~~~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o ondisc.dll tmp.def RcppExports.o h5_import_data_functs.o h5_initialize_functs.o h5_load_row.o h5_simple_read.o sceptre_functs.o shared_functs.o utility_functs.o -LD:/RCompile/CRANpkg/lib/4.5/Rhdf5lib/lib/x64-ucrt -lhdf5_cpp -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lsz -laec -lz -lpsapi -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2026_06_18_15_17_39_23840/RtmpkRwfbe/R.INSTALL307463d07177/ondisc/src'
make[1]: Entering directory '/d/temp/2026_06_18_15_17_39_23840/RtmpkRwfbe/R.INSTALL307463d07177/ondisc/src'
make[1]: Leaving directory '/d/temp/2026_06_18_15_17_39_23840/RtmpkRwfbe/R.INSTALL307463d07177/ondisc/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-ondisc/00new/ondisc/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'ondisc' as ondisc_1.3.5.zip
* DONE (ondisc)