• using R version 4.3.3 (2024-02-29 ucrt)
• using platform: x86_64-w64-mingw32 (64-bit)
• R was compiled by     gcc.exe (GCC) 12.3.0     GNU Fortran (GCC) 12.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'ohun/DESCRIPTION' ... OK
• this is package 'ohun' version '1.0.1'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'ohun' can be installed ... WARNING Found the following significant warnings:   Warning: replacing previous import 'seewave::wav2flac' by 'warbleR::wav2flac' when loading 'ohun' See the install log for details.
• checking installed package size ... NOTE   installed size is 6.8Mb   sub-directories of 1Mb or more:     doc 6.1Mb
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s] OK
• checking whether the package can be loaded with stated dependencies ... [3s] OK
• checking whether the package can be unloaded cleanly ... [3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s] OK
• checking loading without being on the library search path ... [3s] OK
• checking startup messages can be suppressed ... [3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... WARNING Missing or unexported objects:   'warbleR::duration_wavs' 'warbleR::try_na'
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [15s] OK
• checking Rd files ... [1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [1s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [3s] ERROR Running examples in 'ohun-Ex.R' failed The error most likely occurred in: > ### Name: consensus_detection > ### Title: Remove ambiguous detections > ### Aliases: consensus_detection > > ### ** Examples > > { + # load example data + data("lbh1", "lbh_reference") + + # save sound files + tuneR::writeWave(lbh1, file.path(tempdir(), "lbh2.wav")) + + # template for the first sound file in 'lbh_reference' + templ1 <- lbh_reference[1, ] + + # generate template correlations + tc <- template_correlator( + templates = templ1, path = tempdir(), + files = "lbh2.wav" + ) + + # template detection + td <- template_detector(template.correlations = tc, threshold = 0.12) + + # this detection generates 2 split positives + diagnose_detection( + reference = lbh_reference[lbh_reference == "lbh2.wav", ], + detection = td + ) + + # label detection + ltd <- label_detection( + reference = lbh_reference[lbh_reference == "lbh2.wav", ], + detection = td + ) + + # now they can be filter to keep the detection with the highest score for each split + ftd <- consensus_detection(ltd, by = "scores") + + # splits must be 0 + diagnose_detection( + reference = lbh_reference[lbh_reference == "lbh2.wav", ], + detection = ftd + ) + } all selections are OK Error: 'try_na' is not an exported object from 'namespace:warbleR' Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking re-building of vignette outputs ... [87s] ERROR Error(s) in re-building vignettes: --- re-building 'energy_based_detection.Rmd' using rmarkdown Quitting from lines 249-280 [unnamed-chunk-13] (energy_based_detection.Rmd) Error: processing vignette 'energy_based_detection.Rmd' failed with diagnostics: could not find function "sim_songs" --- failed re-building 'energy_based_detection.Rmd' --- re-building 'intro_to_ohun.Rmd' using rmarkdown --- finished re-building 'intro_to_ohun.Rmd' --- re-building 'template_based_detection.Rmd' using rmarkdown Quitting from lines 150-155 [unnamed-chunk-9] (template_based_detection.Rmd) Error: processing vignette 'template_based_detection.Rmd' failed with diagnostics: 'try_na' is not an exported object from 'namespace:warbleR' --- failed re-building 'template_based_detection.Rmd' SUMMARY: processing the following files failed:   'energy_based_detection.Rmd' 'template_based_detection.Rmd' Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [18s] OK
• checking HTML version of manual ... [5s] OK
• DONE

Status: 2 ERRORs, 2 WARNINGs, 1 NOTE