* installing *source* package 'neuroim2' ...
** this is package 'neuroim2' version '0.19.1'
** package 'neuroim2' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.3.0'
using C++17
make[1]: Entering directory '/d/temp/2026_10_12_01_50_00_23142/RtmpSCTBO9/R.INSTALL59ff038e56fa6/neuroim2/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bilateral_filter_3d.cpp -o bilateral_filter_3d.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bilateral_filter_4d.cpp -o bilateral_filter_4d.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cgb.cpp -o cgb.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c conncomp.cpp -o conncomp.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c downsample_3d.cpp -o downsample_3d.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c downsample_4d.cpp -o downsample_4d.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fast_laplacian_enhance.cpp -o fast_laplacian_enhance.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gaussian_blur_sep.cpp -o gaussian_blur_sep.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c indexFuns.cpp -o indexFuns.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nifti_data_io.cpp -o nifti_data_io.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c representative_volume.cpp -o representative_volume.o
representative_volume.cpp: In member function 'virtual void {anonymous}::RowRepresentativeWorker::operator()(std::size_t, std::size_t)':
representative_volume.cpp:41:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
41 | for (int jj = 0; jj < mat.ncol(); ++jj) {
| ~~~^~~~~~~~~~~~
representative_volume.cpp:70:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
70 | for (int jj = 0; jj < mat.ncol(); ++jj) {
| ~~~^~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c searchlight_core.cpp -o searchlight_core.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c series_gather.cpp -o series_gather.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sphere_offsets.cpp -o sphere_offsets.o
g++ -shared -s -static-libgcc -o neuroim2.dll tmp.def RcppExports.o bilateral_filter_3d.o bilateral_filter_4d.o cgb.o conncomp.o downsample_3d.o downsample_4d.o fast_laplacian_enhance.o gaussian_blur_sep.o indexFuns.o nifti_data_io.o representative_volume.o searchlight_core.o series_gather.o sphere_offsets.o -fopenmp -LD:/RCompile/recent/R-4.5.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.5.3/bin/x64 -lRblas -lgfortran -lquadmath -lz -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2026_10_12_01_50_00_23142/RtmpSCTBO9/R.INSTALL59ff038e56fa6/neuroim2/src'
make[1]: Entering directory '/d/temp/2026_10_12_01_50_00_23142/RtmpSCTBO9/R.INSTALL59ff038e56fa6/neuroim2/src'
make[1]: Leaving directory '/d/temp/2026_10_12_01_50_00_23142/RtmpSCTBO9/R.INSTALL59ff038e56fa6/neuroim2/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-neuroim2/00new/neuroim2/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'ndim' in package 'neuroim2'
Creating a new generic function for 'origin' in package 'neuroim2'
Creating a new generic function for 'extensions' in package 'neuroim2'
Creating a new generic function for 'extension' in package 'neuroim2'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'neuroim2' as neuroim2_0.19.1.zip
* DONE (neuroim2)