* installing *source* package 'mums2' ...
** this is package 'mums2' version '0.1.0'
** package 'mums2' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.3.0'
using C++ compiler: 'g++.exe (GCC) 14.3.0'
make[1]: Entering directory '/d/temp/2026_06_11_18_13_40_16617/RtmpKyYrGL/R.INSTALL14d45aec1321/mums2/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c AlphaDiversity.cpp -o AlphaDiversity.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Annotation.cpp -o Annotation.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c AnnotationController.cpp -o AnnotationController.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BetaDiversity.cpp -o BetaDiversity.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BrayCurtisDissimilarity.cpp -o BrayCurtisDissimilarity.o
gcc -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c CleanSpectrum.c -o CleanSpectrum.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CommunityMatrix.cpp -o CommunityMatrix.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c DecomposeMass.cpp -o DecomposeMass.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c DetectNeutralLoses.cpp -o DetectNeutralLoses.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Distance.cpp -o Distance.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Diversity.cpp -o Diversity.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c DiversityMetricFactory.cpp -o DiversityMetricFactory.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c FragmentationTree.cpp -o FragmentationTree.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c GreedyHeuristic.cpp -o GreedyHeuristic.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c HammingDistance.cpp -o HammingDistance.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c HumanMetabolomicsDB.cpp -o HumanMetabolomicsDB.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c JaccardDistance.cpp -o JaccardDistance.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ModifiedCosineScore.cpp -o ModifiedCosineScore.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MolecularFormula.cpp -o MolecularFormula.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MolecularMakeup.cpp -o MolecularMakeup.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MorisitahornIndex.cpp -o MorisitahornIndex.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rarefaction.cpp -o Rarefaction.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/RcppCommon.h:29,
from D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp.h:27,
from RcppExports.cpp:5:
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/r/check_r_headers.h:27:21: note: '#pragma message: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410'
27 | #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410'
35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ReadSpectra.cpp -o ReadSpectra.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ScoringFactory.cpp -o ScoringFactory.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ShannonDiversityIndex.cpp -o ShannonDiversityIndex.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SimpsonsDiversityIndex.cpp -o SimpsonsDiversityIndex.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SorensonIndex.cpp -o SorensonIndex.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SpeciesRichnessDiversity.cpp -o SpeciesRichnessDiversity.o
gcc -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c SpectralEntropy.c -o SpectralEntropy.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ThetaycDissimilarity.cpp -o ThetaycDissimilarity.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c alphabet.cpp -o alphabet.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c alphabettextparser.cpp -o alphabettextparser.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c annotateMs2Features.cpp -o annotateMs2Features.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c composedelement.cpp -o composedelement.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c denovo_molecular_formula_prediction.cpp -o denovo_molecular_formula_prediction.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c distMs2.cpp -o distMs2.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c distributionprobabilityscorer.cpp -o distributionprobabilityscorer.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c diversityCalculations.cpp -o diversityCalculations.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c element.cpp -o element.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c entropy.cpp -o entropy.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c humanMetabolomicsDBController.cpp -o humanMetabolomicsDBController.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c isotopedistribution.cpp -o isotopedistribution.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c moleculesequenceparser.cpp -o moleculesequenceparser.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ms2ms1compare.cpp -o ms2ms1compare.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c progressBar.cpp -o progressBar.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c realmassdecomposer.cpp -o realmassdecomposer.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spectrumReaders.cpp -o spectrumReaders.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c standardmoleculesequenceparser.cpp -o standardmoleculesequenceparser.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-Utils.cpp -o test-Utils.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-alpha_diversity.cpp -o test-alpha_diversity.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-annotation_controller.cpp -o test-annotation_controller.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-beta_diversity.cpp -o test-beta_diversity.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-cpp_matrix.cpp -o test-cpp_matrix.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-diversity_metric_function.cpp -o test-diversity_metric_function.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-fragmentation_tree.cpp -o test-fragmentation_tree.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-greedy_heuristic.cpp -o test-greedy_heuristic.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-molecular_formula.cpp -o test-molecular_formula.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-molecular_formula_similarity.cpp -o test-molecular_formula_similarity.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-molecular_makeup.cpp -o test-molecular_makeup.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-rarefaction.cpp -o test-rarefaction.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-read_spectra.cpp -o test-read_spectra.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/sitmo/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c weights.cpp -o weights.o
g++ -std=gnu++17 -shared -s -static-libgcc -o mums2.dll tmp.def AlphaDiversity.o Annotation.o AnnotationController.o BetaDiversity.o BrayCurtisDissimilarity.o CleanSpectrum.o CommunityMatrix.o DecomposeMass.o DetectNeutralLoses.o Distance.o Diversity.o DiversityMetricFactory.o FragmentationTree.o GreedyHeuristic.o HammingDistance.o HumanMetabolomicsDB.o JaccardDistance.o ModifiedCosineScore.o MolecularFormula.o MolecularMakeup.o MorisitahornIndex.o Rarefaction.o RcppExports.o ReadSpectra.o ScoringFactory.o ShannonDiversityIndex.o SimpsonsDiversityIndex.o SorensonIndex.o SpeciesRichnessDiversity.o SpectralEntropy.o ThetaycDissimilarity.o alphabet.o alphabettextparser.o annotateMs2Features.o composedelement.o denovo_molecular_formula_prediction.o distMs2.o distributionprobabilityscorer.o diversityCalculations.o element.o entropy.o humanMetabolomicsDBController.o isotopedistribution.o moleculesequenceparser.o ms2ms1compare.o progressBar.o realmassdecomposer.o spectrumReaders.o standardmoleculesequenceparser.o test-Utils.o test-alpha_diversity.o test-annotation_controller.o test-beta_diversity.o test-cpp_matrix.o test-diversity_metric_function.o test-fragmentation_tree.o test-greedy_heuristic.o test-molecular_formula.o test-molecular_formula_similarity.o test-molecular_makeup.o test-rarefaction.o test-read_spectra.o test-runner.o weights.o -latomic -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2026_06_11_18_13_40_16617/RtmpKyYrGL/R.INSTALL14d45aec1321/mums2/src'
make[1]: Entering directory '/d/temp/2026_06_11_18_13_40_16617/RtmpKyYrGL/R.INSTALL14d45aec1321/mums2/src'
make[1]: Leaving directory '/d/temp/2026_06_11_18_13_40_16617/RtmpKyYrGL/R.INSTALL14d45aec1321/mums2/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-mums2/00new/mums2/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'mums2' as mums2_0.1.0.zip
* DONE (mums2)