- using R version 4.4.3 (2025-02-28 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'medfateland/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'medfateland' version '2.8.1'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'medfateland' can be installed ... OK
See the install log for details.
- used C++ compiler: 'g++.exe (GCC) 13.3.0'
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [11s] OK
- checking whether the package can be loaded with stated dependencies ... [10s] OK
- checking whether the package can be unloaded cleanly ... [11s] OK
- checking whether the namespace can be loaded with stated dependencies ... [10s] OK
- checking whether the namespace can be unloaded cleanly ... [11s] OK
- checking loading without being on the library search path ... [11s] OK
- checking whether startup messages can be suppressed ... [11s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [45s] OK
- checking Rd files ... [2s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [11s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking R/sysdata.rda ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compiled code ... OK
- checking examples ... [26s] ERROR
Running examples in 'medfateland-Ex.R' failed
The error most likely occurred in:
> ### Name: overland_routing
> ### Title: Overland routing for TETIS sub-model
> ### Aliases: overland_routing cell_neighbors
>
> ### ** Examples
>
> # Load example watershed data
> data("example_watershed")
>
> # Get bounding box to determine limits
> b <- sf::st_bbox(example_watershed)
> b
xmin ymin xmax ymax
401430 4671870 402830 4672570
>
> # Define a raster topology, using terra package,
> # with the same CRS as the watershed. In this example cells have 100 m side.
> # Coordinates in the 'sf' object are assumed to be cell centers
> r <-terra::rast(xmin = 401380, ymin = 4671820, xmax = 402880, ymax = 4672620,
+ nrow = 8, ncol = 15, crs = "epsg:32631")
Warning: PROJ: proj_create_from_database: Cannot find proj.db (GDAL error 1)
Error: [rast] empty srs
Execution halted
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [45s] ERROR
Running 'testthat.R' [45s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(medfateland)
Loading required package: medfate
Package 'medfate' [ver. 4.8.4]
Package 'medfateland' [ver. 2.8.1]
>
> test_check("medfateland")
v No wildland locations with NULL values in column 'forest'.
v All objects in column 'forest' have the right class.
! Wrong tree species names detected for 1 records (0.1%) in 1 wildland locations (1%).
i Filtering out problematic tree/shrub records in 1 locations (1%) with missing/wrong forest data.
! Missing 'forest' data in 1 wildland locations (1%).
v All objects in column 'forest' have the right class.
v No missing/wrong values detected in key tree/shrub attributes of 'forest' objects.
i Filling 1 missing forest(s) with default forest.
! Wrong tree species names detected for 1 records (0.1%) in 1 wildland locations (1%).
! Missing 'forest' data in 1 wildland locations (1%).
Saving _problems/test_desc-10.R
Package 'meteoland' [ver. 2.2.3]
Saving _problems/test_land-7.R
Saving _problems/test_land_day-7.R
[ FAIL 3 | WARN 3 | SKIP 1 | PASS 34 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1):
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_desc.R:9:1'): (code run outside of `test_that()`) ──────────────
Error: [rast] empty srs
Backtrace:
▆
1. ├─terra::rast(...) at test_desc.R:9:1
2. └─terra::rast(...)
3. └─terra (local) .local(x = x, ...)
4. └─terra:::new_rast(...)
5. └─terra:::messages(r, "rast")
6. └─terra:::error(f, x@pntr$getError())
── Error ('test_land.R:6:1'): (code run outside of `test_that()`) ──────────────
Error: [rast] empty srs
Backtrace:
▆
1. ├─terra::rast(...) at test_land.R:6:1
2. └─terra::rast(...)
3. └─terra (local) .local(x = x, ...)
4. └─terra:::new_rast(...)
5. └─terra:::messages(r, "rast")
6. └─terra:::error(f, x@pntr$getError())
── Error ('test_land_day.R:6:1'): (code run outside of `test_that()`) ──────────
Error: [rast] empty srs
Backtrace:
▆
1. ├─terra::rast(...) at test_land_day.R:6:1
2. └─terra::rast(...)
3. └─terra (local) .local(x = x, ...)
4. └─terra:::new_rast(...)
5. └─terra:::messages(r, "rast")
6. └─terra:::error(f, x@pntr$getError())
[ FAIL 3 | WARN 3 | SKIP 1 | PASS 34 ]
Error:
! Test failures.
Execution halted
- checking PDF version of manual ... [26s] OK
- checking HTML version of manual ... [8s] OK
- DONE
Status: 2 ERRORs