* installing *source* package 'medfate' ...
** this is package 'medfate' version '5.0.0'
** package 'medfate' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.3.0'
make[1]: Entering directory '/d/temp/2026_05_09_01_50_01_15783/Rtmpmw4qWj/R.INSTALL129e0619418f9/medfate/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c aspwb.cpp -o aspwb.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c biophysicsutils.cpp -o biophysicsutils.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c biophysicsutils_c.cpp -o biophysicsutils_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c carbon.cpp -o carbon.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c carbon_c.cpp -o carbon_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c communication_structures.cpp -o communication_structures.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c control_c.cpp -o control_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c decomposition.cpp -o decomposition.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c decomposition_c.cpp -o decomposition_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c firebehaviour.cpp -o firebehaviour.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c firebehaviour_c.cpp -o firebehaviour_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fireseverity_c.cpp -o fireseverity_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c forestutils.cpp -o forestutils.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c forestutils_c.cpp -o forestutils_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fuelmoisture.cpp -o fuelmoisture.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fuelmoisture_c.cpp -o fuelmoisture_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fuelstructure.cpp -o fuelstructure.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fuelstructure_c.cpp -o fuelstructure_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c growth.cpp -o growth.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c growth_day.cpp -o growth_day.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c growth_day_c.cpp -o growth_day_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hydraulics.cpp -o hydraulics.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hydraulics_c.cpp -o hydraulics_c.o
hydraulics_c.cpp: In function 'double gmin_c(double, double, double, double, double)':
hydraulics_c.cpp:122:14: warning: 'gmin' may be used uninitialized [-Wmaybe-uninitialized]
122 | return(gmin);
| ^
hydraulics_c.cpp:116:10: note: 'gmin' was declared here
116 | double gmin;
| ^~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hydrology.cpp -o hydrology.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hydrology_c.cpp -o hydrology_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c incbeta_c.cpp -o incbeta_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c incgamma_c.cpp -o incgamma_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c inner_sperry.cpp -o inner_sperry.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c inner_sperry_c.cpp -o inner_sperry_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c inner_sureau.cpp -o inner_sureau.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c inner_sureau_c.cpp -o inner_sureau_c.o
inner_sureau_c.cpp: In function 'void semi_implicit_integration_inner_c(SureauNetwork&, double, const SureauOpt&, const std::string&, const std::string&)':
inner_sureau_c.cpp:236:25: warning: 'Psi_LApo_np1' may be used uninitialized [-Wmaybe-uninitialized]
236 | double alpha, Psi_td, Psi_LApo_np1, Psi_SApo_np1, Psi_LSym_np1, Psi_SSym_np1;
| ^~~~~~~~~~~~
inner_sureau_c.cpp:236:39: warning: 'Psi_SApo_np1' may be used uninitialized [-Wmaybe-uninitialized]
236 | double alpha, Psi_td, Psi_LApo_np1, Psi_SApo_np1, Psi_LSym_np1, Psi_SSym_np1;
| ^~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lightextinction_advanced.cpp -o lightextinction_advanced.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lightextinction_advanced_c.cpp -o lightextinction_advanced_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lightextinction_basic.cpp -o lightextinction_basic.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lightextinction_basic_c.cpp -o lightextinction_basic_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lowlevel_structures_c.cpp -o lowlevel_structures_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c medfate_runners.cpp -o medfate_runners.o
medfate_runners.cpp: In constructor 'single_runner::single_runner(Rcpp::List, double, double, double, double)':
medfate_runners.cpp:63: note: '-Wmisleading-indentation' is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers
63 | } else if(x.control.transpirationMode=="Sperry" || x.control.transpirationMode=="Sureau") {
medfate_runners.cpp:63: note: adding '-flarge-source-files' will allow for more column-tracking support, at the expense of compilation time and memory
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c medfate_workers.cpp -o medfate_workers.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c modelInput.cpp -o modelInput.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c modelInput_c.cpp -o modelInput_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c numerical_solving.cpp -o numerical_solving.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c numerical_solving_c.cpp -o numerical_solving_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c paramutils.cpp -o paramutils.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c phenology.cpp -o phenology.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c phenology_c.cpp -o phenology_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c photosynthesis.cpp -o photosynthesis.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c photosynthesis_c.cpp -o photosynthesis_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c root.cpp -o root.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c root_c.cpp -o root_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c soil.cpp -o soil.o
soil.cpp: In function 'Rcpp::NumericVector campbellParamsClappHornberger(Rcpp::String)':
soil.cpp:418:10: warning: 'clapp.ClappHornberger::b' may be used uninitialized [-Wmaybe-uninitialized]
418 | cp[2] = clapp.b;
soil.cpp:415:20: note: 'clapp.ClappHornberger::b' was declared here
415 | ClappHornberger clapp = ClappHornberger(soilType.get_cstring());
| ^~~~~
soil.cpp:419:10: warning: 'clapp.ClappHornberger::K_sat_cm_h' may be used uninitialized [-Wmaybe-uninitialized]
419 | cp[3] = clapp.K_sat_cm_h;
soil.cpp:415:20: note: 'clapp.ClappHornberger::K_sat_cm_h' was declared here
415 | ClappHornberger clapp = ClappHornberger(soilType.get_cstring());
| ^~~~~
soil.cpp:417:10: warning: 'clapp.ClappHornberger::psi_sat_cm' may be used uninitialized [-Wmaybe-uninitialized]
417 | cp[1] = clapp.psi_sat_cm;
soil.cpp:415:20: note: 'clapp.ClappHornberger::psi_sat_cm' was declared here
415 | ClappHornberger clapp = ClappHornberger(soilType.get_cstring());
| ^~~~~
soil.cpp:416:10: warning: 'clapp.ClappHornberger::theta_sat' may be used uninitialized [-Wmaybe-uninitialized]
416 | cp[0] = clapp.theta_sat;
soil.cpp:415:20: note: 'clapp.ClappHornberger::theta_sat' was declared here
415 | ClappHornberger clapp = ClappHornberger(soilType.get_cstring());
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c soil_c.cpp -o soil_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c soil_thermodynamics.cpp -o soil_thermodynamics.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c soil_thermodynamics_c.cpp -o soil_thermodynamics_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spwb.cpp -o spwb.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spwb_day.cpp -o spwb_day.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spwb_day_c.cpp -o spwb_day_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tissuemoisture.cpp -o tissuemoisture.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tissuemoisture_c.cpp -o tissuemoisture_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c transpiration_advanced.cpp -o transpiration_advanced.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c transpiration_advanced_c.cpp -o transpiration_advanced_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c transpiration_basic.cpp -o transpiration_basic.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c transpiration_basic_c.cpp -o transpiration_basic_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c windKatul.cpp -o windKatul.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c windKatul_c.cpp -o windKatul_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c windextinction_c.cpp -o windextinction_c.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c woodformation.cpp -o woodformation.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.5/meteoland/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DRCPP_PARALLEL_USE_TBB=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c woodformation_c.cpp -o woodformation_c.o
g++ -std=gnu++17 -shared -s -static-libgcc -o medfate.dll tmp.def RcppExports.o aspwb.o biophysicsutils.o biophysicsutils_c.o carbon.o carbon_c.o communication_structures.o control_c.o decomposition.o decomposition_c.o firebehaviour.o firebehaviour_c.o fireseverity_c.o forestutils.o forestutils_c.o fuelmoisture.o fuelmoisture_c.o fuelstructure.o fuelstructure_c.o growth.o growth_day.o growth_day_c.o hydraulics.o hydraulics_c.o hydrology.o hydrology_c.o incbeta_c.o incgamma_c.o inner_sperry.o inner_sperry_c.o inner_sureau.o inner_sureau_c.o lightextinction_advanced.o lightextinction_advanced_c.o lightextinction_basic.o lightextinction_basic_c.o lowlevel_structures_c.o medfate_runners.o medfate_workers.o modelInput.o modelInput_c.o numerical_solving.o numerical_solving_c.o paramutils.o phenology.o phenology_c.o photosynthesis.o photosynthesis_c.o root.o root_c.o soil.o soil_c.o soil_thermodynamics.o soil_thermodynamics_c.o spwb.o spwb_day.o spwb_day_c.o tissuemoisture.o tissuemoisture_c.o transpiration_advanced.o transpiration_advanced_c.o transpiration_basic.o transpiration_basic_c.o windKatul.o windKatul_c.o windextinction_c.o woodformation.o woodformation_c.o -fopenmp -LD:/RCompile/recent/R-4.5.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.5.3/bin/x64 -lRblas -lgfortran -lquadmath -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2026_05_09_01_50_01_15783/Rtmpmw4qWj/R.INSTALL129e0619418f9/medfate/src'
make[1]: Entering directory '/d/temp/2026_05_09_01_50_01_15783/Rtmpmw4qWj/R.INSTALL129e0619418f9/medfate/src'
make[1]: Leaving directory '/d/temp/2026_05_09_01_50_01_15783/Rtmpmw4qWj/R.INSTALL129e0619418f9/medfate/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-medfate/00new/medfate/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'medfate' as medfate_5.0.0.zip
* DONE (medfate)