* installing *source* package 'jSDM' ...
** package 'jSDM' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2025_09_05_01_50_00_10480/Rtmp8y2fCP/R.INSTALL28e1c7adc7759/jSDM/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_logit.cpp -o Rcpp_jSDM_binomial_logit.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_logit.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_logit_fixed_site.cpp -o Rcpp_jSDM_binomial_logit_fixed_site.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_logit_fixed_site.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_logit_fixed_site_lv.cpp -o Rcpp_jSDM_binomial_logit_fixed_site_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_logit_fixed_site_lv.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_logit_lv.cpp -o Rcpp_jSDM_binomial_logit_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_logit_lv.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_logit_rand_site.cpp -o Rcpp_jSDM_binomial_logit_rand_site.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_logit_rand_site.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_logit_rand_site_lv.cpp -o Rcpp_jSDM_binomial_logit_rand_site_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_logit_rand_site_lv.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_logit_traits.cpp -o Rcpp_jSDM_binomial_logit_traits.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_logit_traits.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_logit_traits_fixed_site.cpp -o Rcpp_jSDM_binomial_logit_traits_fixed_site.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_logit_traits_fixed_site.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_logit_traits_fixed_site_lv.cpp -o Rcpp_jSDM_binomial_logit_traits_fixed_site_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_logit_traits_fixed_site_lv.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_logit_traits_lv.cpp -o Rcpp_jSDM_binomial_logit_traits_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_logit_traits_lv.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_logit_traits_rand_site.cpp -o Rcpp_jSDM_binomial_logit_traits_rand_site.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_logit_traits_rand_site.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_logit_traits_rand_site_lv.cpp -o Rcpp_jSDM_binomial_logit_traits_rand_site_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_logit_traits_rand_site_lv.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit.cpp -o Rcpp_jSDM_binomial_probit.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_fixed_site.cpp -o Rcpp_jSDM_binomial_probit_fixed_site.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_fixed_site.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_fixed_site_long_format.cpp -o Rcpp_jSDM_binomial_probit_fixed_site_long_format.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_fixed_site_long_format.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_fixed_site_lv.cpp -o Rcpp_jSDM_binomial_probit_fixed_site_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_fixed_site_lv.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_fixed_site_lv_long_format.cpp -o Rcpp_jSDM_binomial_probit_fixed_site_lv_long_format.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_fixed_site_lv_long_format.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_long_format.cpp -o Rcpp_jSDM_binomial_probit_long_format.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_long_format.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_lv.cpp -o Rcpp_jSDM_binomial_probit_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_lv.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_lv_long_format.cpp -o Rcpp_jSDM_binomial_probit_lv_long_format.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_lv_long_format.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_rand_site.cpp -o Rcpp_jSDM_binomial_probit_rand_site.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_rand_site.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_rand_site_long_format.cpp -o Rcpp_jSDM_binomial_probit_rand_site_long_format.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_rand_site_long_format.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_rand_site_lv.cpp -o Rcpp_jSDM_binomial_probit_rand_site_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_rand_site_lv.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_rand_site_lv_long_format.cpp -o Rcpp_jSDM_binomial_probit_rand_site_lv_long_format.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_rand_site_lv_long_format.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_traits.cpp -o Rcpp_jSDM_binomial_probit_traits.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_traits.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_traits_fixed_site.cpp -o Rcpp_jSDM_binomial_probit_traits_fixed_site.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_traits_fixed_site.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_traits_fixed_site_long_format.cpp -o Rcpp_jSDM_binomial_probit_traits_fixed_site_long_format.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_traits_fixed_site_long_format.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_traits_fixed_site_lv.cpp -o Rcpp_jSDM_binomial_probit_traits_fixed_site_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_traits_fixed_site_lv.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_traits_fixed_site_lv_long_format.cpp -o Rcpp_jSDM_binomial_probit_traits_fixed_site_lv_long_format.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_traits_fixed_site_lv_long_format.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_traits_long_format.cpp -o Rcpp_jSDM_binomial_probit_traits_long_format.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_traits_long_format.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_traits_lv.cpp -o Rcpp_jSDM_binomial_probit_traits_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_traits_lv.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_traits_lv_long_format.cpp -o Rcpp_jSDM_binomial_probit_traits_lv_long_format.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_traits_lv_long_format.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_traits_rand_site.cpp -o Rcpp_jSDM_binomial_probit_traits_rand_site.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_traits_rand_site.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_traits_rand_site_long_format.cpp -o Rcpp_jSDM_binomial_probit_traits_rand_site_long_format.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_traits_rand_site_long_format.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_traits_rand_site_lv.cpp -o Rcpp_jSDM_binomial_probit_traits_rand_site_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_traits_rand_site_lv.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_binomial_probit_traits_rand_site_lv_long_format.cpp -o Rcpp_jSDM_binomial_probit_traits_rand_site_lv_long_format.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_binomial_probit_traits_rand_site_lv_long_format.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_gaussian.cpp -o Rcpp_jSDM_gaussian.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_gaussian.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_gaussian_fixed_site.cpp -o Rcpp_jSDM_gaussian_fixed_site.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_gaussian_fixed_site.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_gaussian_fixed_site_lv.cpp -o Rcpp_jSDM_gaussian_fixed_site_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_gaussian_fixed_site_lv.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_gaussian_lv.cpp -o Rcpp_jSDM_gaussian_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_gaussian_lv.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_gaussian_rand_site.cpp -o Rcpp_jSDM_gaussian_rand_site.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_gaussian_rand_site.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_gaussian_rand_site_lv.cpp -o Rcpp_jSDM_gaussian_rand_site_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_gaussian_rand_site_lv.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_gaussian_traits.cpp -o Rcpp_jSDM_gaussian_traits.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_gaussian_traits.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_gaussian_traits_fixed_site.cpp -o Rcpp_jSDM_gaussian_traits_fixed_site.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_gaussian_traits_fixed_site.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_gaussian_traits_fixed_site_lv.cpp -o Rcpp_jSDM_gaussian_traits_fixed_site_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_gaussian_traits_fixed_site_lv.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_gaussian_traits_lv.cpp -o Rcpp_jSDM_gaussian_traits_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_gaussian_traits_lv.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_gaussian_traits_rand_site.cpp -o Rcpp_jSDM_gaussian_traits_rand_site.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_gaussian_traits_rand_site.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_gaussian_traits_rand_site_lv.cpp -o Rcpp_jSDM_gaussian_traits_rand_site_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_gaussian_traits_rand_site_lv.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_poisson_log.cpp -o Rcpp_jSDM_poisson_log.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_poisson_log.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_poisson_log_fixed_site.cpp -o Rcpp_jSDM_poisson_log_fixed_site.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_poisson_log_fixed_site.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_poisson_log_fixed_site_lv.cpp -o Rcpp_jSDM_poisson_log_fixed_site_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_poisson_log_fixed_site_lv.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_poisson_log_lv.cpp -o Rcpp_jSDM_poisson_log_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_poisson_log_lv.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_poisson_log_rand_site.cpp -o Rcpp_jSDM_poisson_log_rand_site.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_poisson_log_rand_site.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_poisson_log_rand_site_lv.cpp -o Rcpp_jSDM_poisson_log_rand_site_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_poisson_log_rand_site_lv.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_poisson_log_traits.cpp -o Rcpp_jSDM_poisson_log_traits.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_poisson_log_traits.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_poisson_log_traits_fixed_site.cpp -o Rcpp_jSDM_poisson_log_traits_fixed_site.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_poisson_log_traits_fixed_site.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_poisson_log_traits_fixed_site_lv.cpp -o Rcpp_jSDM_poisson_log_traits_fixed_site_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_poisson_log_traits_fixed_site_lv.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_poisson_log_traits_lv.cpp -o Rcpp_jSDM_poisson_log_traits_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_poisson_log_traits_lv.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_poisson_log_traits_rand_site.cpp -o Rcpp_jSDM_poisson_log_traits_rand_site.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_poisson_log_traits_rand_site.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_poisson_log_traits_rand_site_lv.cpp -o Rcpp_jSDM_poisson_log_traits_rand_site_lv.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_poisson_log_traits_rand_site_lv.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rcpp_jSDM_useful.cpp -o Rcpp_jSDM_useful.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from Rcpp_jSDM_useful.cpp:8:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -shared -s -static-libgcc -o jSDM.dll tmp.def RcppExports.o Rcpp_jSDM_binomial_logit.o Rcpp_jSDM_binomial_logit_fixed_site.o Rcpp_jSDM_binomial_logit_fixed_site_lv.o Rcpp_jSDM_binomial_logit_lv.o Rcpp_jSDM_binomial_logit_rand_site.o Rcpp_jSDM_binomial_logit_rand_site_lv.o Rcpp_jSDM_binomial_logit_traits.o Rcpp_jSDM_binomial_logit_traits_fixed_site.o Rcpp_jSDM_binomial_logit_traits_fixed_site_lv.o Rcpp_jSDM_binomial_logit_traits_lv.o Rcpp_jSDM_binomial_logit_traits_rand_site.o Rcpp_jSDM_binomial_logit_traits_rand_site_lv.o Rcpp_jSDM_binomial_probit.o Rcpp_jSDM_binomial_probit_fixed_site.o Rcpp_jSDM_binomial_probit_fixed_site_long_format.o Rcpp_jSDM_binomial_probit_fixed_site_lv.o Rcpp_jSDM_binomial_probit_fixed_site_lv_long_format.o Rcpp_jSDM_binomial_probit_long_format.o Rcpp_jSDM_binomial_probit_lv.o Rcpp_jSDM_binomial_probit_lv_long_format.o Rcpp_jSDM_binomial_probit_rand_site.o Rcpp_jSDM_binomial_probit_rand_site_long_format.o Rcpp_jSDM_binomial_probit_rand_site_lv.o Rcpp_jSDM_binomial_probit_rand_site_lv_long_format.o Rcpp_jSDM_binomial_probit_traits.o Rcpp_jSDM_binomial_probit_traits_fixed_site.o Rcpp_jSDM_binomial_probit_traits_fixed_site_long_format.o Rcpp_jSDM_binomial_probit_traits_fixed_site_lv.o Rcpp_jSDM_binomial_probit_traits_fixed_site_lv_long_format.o Rcpp_jSDM_binomial_probit_traits_long_format.o Rcpp_jSDM_binomial_probit_traits_lv.o Rcpp_jSDM_binomial_probit_traits_lv_long_format.o Rcpp_jSDM_binomial_probit_traits_rand_site.o Rcpp_jSDM_binomial_probit_traits_rand_site_long_format.o Rcpp_jSDM_binomial_probit_traits_rand_site_lv.o Rcpp_jSDM_binomial_probit_traits_rand_site_lv_long_format.o Rcpp_jSDM_gaussian.o Rcpp_jSDM_gaussian_fixed_site.o Rcpp_jSDM_gaussian_fixed_site_lv.o Rcpp_jSDM_gaussian_lv.o Rcpp_jSDM_gaussian_rand_site.o Rcpp_jSDM_gaussian_rand_site_lv.o Rcpp_jSDM_gaussian_traits.o Rcpp_jSDM_gaussian_traits_fixed_site.o Rcpp_jSDM_gaussian_traits_fixed_site_lv.o Rcpp_jSDM_gaussian_traits_lv.o Rcpp_jSDM_gaussian_traits_rand_site.o Rcpp_jSDM_gaussian_traits_rand_site_lv.o Rcpp_jSDM_poisson_log.o Rcpp_jSDM_poisson_log_fixed_site.o Rcpp_jSDM_poisson_log_fixed_site_lv.o Rcpp_jSDM_poisson_log_lv.o Rcpp_jSDM_poisson_log_rand_site.o Rcpp_jSDM_poisson_log_rand_site_lv.o Rcpp_jSDM_poisson_log_traits.o Rcpp_jSDM_poisson_log_traits_fixed_site.o Rcpp_jSDM_poisson_log_traits_fixed_site_lv.o Rcpp_jSDM_poisson_log_traits_lv.o Rcpp_jSDM_poisson_log_traits_rand_site.o Rcpp_jSDM_poisson_log_traits_rand_site_lv.o Rcpp_jSDM_useful.o -L/lib -lgsl -lgslcblas -fopenmp -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_09_05_01_50_00_10480/Rtmp8y2fCP/R.INSTALL28e1c7adc7759/jSDM/src'
make[1]: Entering directory '/d/temp/2025_09_05_01_50_00_10480/Rtmp8y2fCP/R.INSTALL28e1c7adc7759/jSDM/src'
make[1]: Leaving directory '/d/temp/2025_09_05_01_50_00_10480/Rtmp8y2fCP/R.INSTALL28e1c7adc7759/jSDM/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-jSDM/00new/jSDM/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'jSDM' as jSDM_0.2.6.zip
* DONE (jSDM)