- using R version 4.4.3 (2025-02-28 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'halk/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'halk' version '0.0.5'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'halk' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s] OK
- checking whether the package can be unloaded cleanly ... [1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s] OK
- checking loading without being on the library search path ... [1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [5s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking R/sysdata.rda ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [5s] ERROR
Running examples in 'halk-Ex.R' failed
The error most likely occurred in:
> ### Name: calc_stat_scores
> ### Title: Compute test statistics for comparing actual and estimated ages
> ### Aliases: calc_stat_scores calc_ks_score calc_chi_score
>
> ### ** Examples
>
> halk <- make_halk(spp_data, levels = c("spp"))
> newdat <- laa_data
> newdat$spp <- "bluegill"
> pred_ages <- assign_ages(newdat, halk)
> calc_ks_score(pred_ages)
Error in `dplyr::summarize()`:
ℹ In argument: `ks.stat = purrr::map_df(...)`.
ℹ In group 1: `spp = "bluegill"`.
Caused by error:
! `ks.stat` must be size 1, not 11.
ℹ To return more or less than 1 row per group, use `reframe()`.
Backtrace:
▆
1. ├─halk::calc_ks_score(pred_ages)
2. │ └─... %>% dplyr::ungroup()
3. ├─dplyr::ungroup(.)
4. ├─tidyr::unnest(., cols = c(.data$ks.stat))
5. ├─dplyr::summarize(...)
6. ├─dplyr:::summarise.grouped_df(...)
7. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
8. │ └─base::withCallingHandlers(...)
9. ├─dplyr:::dplyr_internal_error(...)
10. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
11. │ └─rlang:::signal_abort(cnd, .file)
12. │ └─base::signalCondition(cnd)
13. └─dplyr (local) `<fn>`(`<dpl:::__>`)
14. └─dplyr (local) handler(cnd)
15. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
Execution halted
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [29s] OK
Running 'testthat.R' [29s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [13s] OK
- checking PDF version of manual ... [17s] OK
- checking HTML version of manual ... [4s] OK
- DONE
Status: 1 ERROR