* installing *source* package 'glmmsel' ...
** package 'glmmsel' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2025_06_23_01_50_00_4889/Rtmp88fhpc/R.INSTALL1ef5044001271/glmmsel/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c auxiliary.cpp -o auxiliary.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cd.cpp -o cd.o
In file included from d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\cmath:49,
from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/platform/compiler.h:100,
from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/r/headers.h:66,
from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:30,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from cd.cpp:1:
In function 'constexpr double std::abs(double)',
inlined from 'void cd::update_intercept(fit&, const data&)' at cd.cpp:133:43:
d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\std_abs.h:72:30: warning: 'delta_beta0' may be used uninitialized [-Wmaybe-uninitialized]
72 | { return __builtin_fabs(__x); }
| ^
cd.cpp: In member function 'void cd::update_intercept(fit&, const data&)':
cd.cpp:92:10: note: 'delta_beta0' was declared here
92 | double delta_beta0;
| ^~~~~~~~~~~
In function 'constexpr double std::abs(double)',
inlined from 'void cd::update_intercept(fit&, const data&)' at cd.cpp:133:66:
d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\std_abs.h:72:30: warning: 'delta_gamma0' may be used uninitialized [-Wmaybe-uninitialized]
72 | { return __builtin_fabs(__x); }
| ^
cd.cpp: In member function 'void cd::update_intercept(fit&, const data&)':
cd.cpp:93:10: note: 'delta_gamma0' was declared here
93 | double delta_gamma0;
| ^~~~~~~~~~~~
cd.cpp: In member function 'void cd::compute_lambda(const fit&, data&, const arma::mat&, const arma::uvec&)':
cd.cpp:73:5: warning: 'lambda_k' may be used uninitialized [-Wmaybe-uninitialized]
73 | if (lambda_k > lambda) lambda = lambda_k;
| ^~
cd.cpp:28:12: note: 'lambda_k' was declared here
28 | double lambda_k;
| ^~~~~~~~
In function 'constexpr double std::abs(double)',
inlined from 'void cd::update_slope(fit&, const data&, const arma::uword&)' at cd.cpp:206:43:
d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\std_abs.h:72:30: warning: 'delta_beta' may be used uninitialized [-Wmaybe-uninitialized]
72 | { return __builtin_fabs(__x); }
| ^
cd.cpp: In member function 'void cd::update_slope(fit&, const data&, const arma::uword&)':
cd.cpp:151:10: note: 'delta_beta' was declared here
151 | double delta_beta;
| ^~~~~~~~~~
In function 'constexpr double std::abs(double)',
inlined from 'void cd::update_slope(fit&, const data&, const arma::uword&)' at cd.cpp:206:65:
d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\std_abs.h:72:30: warning: 'delta_gamma' may be used uninitialized [-Wmaybe-uninitialized]
72 | { return __builtin_fabs(__x); }
| ^
cd.cpp: In member function 'void cd::update_slope(fit&, const data&, const arma::uword&)':
cd.cpp:152:10: note: 'delta_gamma' was declared here
152 | double delta_gamma;
| ^~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fitpath.cpp -o fitpath.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ls.cpp -o ls.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c path.cpp -o path.o
path.cpp: In member function 'void path::run(cd&, ls&, pql&)':
path.cpp:50:39: warning: comparison of integer expressions of different signedness: 'arma::enable_if2<true, unsigned int>::result' {aka 'unsigned int'} and 'int' [-Wsign-compare]
49 | if (compute_lambda && (data.intercept + data.random_intercept + arma::sum(fit.beta != 0) +
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
50 | arma::sum(fit.gamma != 0) + 1 >= data.n)) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
path.cpp:92:34: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
92 | if (compute_lambda && (nnz_i == data.p)) {
| ~~~~~~^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pql.cpp -o pql.o
g++ -std=gnu++17 -shared -s -static-libgcc -o glmmsel.dll tmp.def RcppExports.o auxiliary.o cd.o fitpath.o ls.o path.o pql.o -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_06_23_01_50_00_4889/Rtmp88fhpc/R.INSTALL1ef5044001271/glmmsel/src'
make[1]: Entering directory '/d/temp/2025_06_23_01_50_00_4889/Rtmp88fhpc/R.INSTALL1ef5044001271/glmmsel/src'
make[1]: Leaving directory '/d/temp/2025_06_23_01_50_00_4889/Rtmp88fhpc/R.INSTALL1ef5044001271/glmmsel/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-glmmsel/00new/glmmsel/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'glmmsel' as glmmsel_1.0.2.zip
* DONE (glmmsel)