* installing *source* package 'fastei' ...
** package 'fastei' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2025_07_25_01_50_00_22362/RtmpSw8m7j/R.INSTALL2e4e016ec6b9f/fastei/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
gcc -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bootstrap.c -o bootstrap.o
bootstrap.c: In function 'bootstrapA':
bootstrap.c:133:9: warning: unused variable 'matsize' [-Wunused-variable]
133 | int matsize = wmat->cols * xmat->rows;
| ^~~~~~~
bootstrap.c:132:9: warning: unused variable 'samples' [-Wunused-variable]
132 | int samples = bdim * bootiter;
| ^~~~~~~
bootstrap.c: In function 'bootSingleMat':
bootstrap.c:248:9: warning: unused variable 'matsize' [-Wunused-variable]
248 | int matsize = xmat->rows;
| ^~~~~~~
gcc -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dynamic_program.c -o dynamic_program.o
dynamic_program.c: In function 'aggregateGroups':
dynamic_program.c:483:31: warning: 'boundaries' may be used uninitialized [-Wmaybe-uninitialized]
483 | bootstrapMatrix = testBootstrap(&quality, set_method, xmat, wmat, boundaries, -1, bootiter, q_method,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
484 | p_method, convergence, log_convergence, maxIter, maxSeconds, *inputParams);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dynamic_program.c:446:10: note: 'boundaries' was declared here
446 | int *boundaries;
| ^~~~~~~~~~
gcc -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c exact.c -o exact.o
gcc -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hitAndRun.c -o hitAndRun.o
hitAndRun.c: In function 'saveOmegaSetToCSV':
hitAndRun.c:88:37: warning: unknown conversion type character 'z' in format [-Wformat=]
88 | fprintf(f, "%u,%zu,%u,%u,%.0f\n", b, s, g, c, MATRIX_AT_PTR(mat, g, c));
| ^
hitAndRun.c:88:41: warning: format '%u' expects argument of type 'unsigned int', but argument 4 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
88 | fprintf(f, "%u,%zu,%u,%u,%.0f\n", b, s, g, c, MATRIX_AT_PTR(mat, g, c));
| ~^ ~
| | |
| unsigned int size_t {aka long long unsigned int}
| %llu
hitAndRun.c:88:49: warning: format '%f' expects argument of type 'double', but argument 6 has type 'int' [-Wformat=]
88 | fprintf(f, "%u,%zu,%u,%u,%.0f\n", b, s, g, c, MATRIX_AT_PTR(mat, g, c));
| ~~~^ ~
| | |
| double int
| %.0d
hitAndRun.c:88:32: warning: too many arguments for format [-Wformat-extra-args]
88 | fprintf(f, "%u,%zu,%u,%u,%.0f\n", b, s, g, c, MATRIX_AT_PTR(mat, g, c));
| ^~~~~~~~~~~~~~~~~~~~~
hitAndRun.c: In function 'generateOmegaSet':
hitAndRun.c:212:14: warning: unused variable 'arraySize' [-Wunused-variable]
212 | uint32_t arraySize = M * S;
| ^~~~~~~~~
hitAndRun.c: At top level:
hitAndRun.c:307:6: warning: function declaration isn't a prototype [-Wstrict-prototypes]
307 | void encode()
| ^~~~~~
hitAndRun.c:450:6: warning: function declaration isn't a prototype [-Wstrict-prototypes]
450 | void precomputeLogGammas()
| ^~~~~~~~~~~~~~~~~~~
hitAndRun.c: In function 'computeQ':
hitAndRun.c:536:20: warning: unused variable 'qsum' [-Wunused-variable]
536 | double qsum = 0;
| ^~~~
hitAndRun.c: In function 'computeQHitAndRun':
hitAndRun.c:604:25: warning: unused variable 'currentMatrix' [-Wunused-variable]
604 | Matrix *currentMatrix = currentSet->data[s]; // Z
| ^~~~~~~~~~~~~
gcc -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c main.c -o main.o
main.c:404:5: warning: function declaration isn't a prototype [-Wstrict-prototypes]
404 | int checkGroups()
| ^~~~~~~~~~~
main.c: In function 'EMAlgoritm':
main.c:520:20: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
520 | if (i >= 1 && (fabs(newLL - oldLL) < LLconvergence || convergeMatrix(&newProbability, currentP, convergence)) ||
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
main.c:571:13: warning: unused variable 'logGammaArr' [-Wunused-variable]
571 | double *logGammaArr = NULL;
| ^~~~~~~~~~~
gcc -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c multinomial.c -o multinomial.o
multinomial.c:74:13: warning: function declaration isn't a prototype [-Wstrict-prototypes]
74 | static void precomputeLogGammasMult()
| ^~~~~~~~~~~~~~~~~~~~~~~
gcc -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c multivariate-cdf.c -o multivariate-cdf.o
gcc -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c multivariate-pdf.c -o multivariate-pdf.o
gcc -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils_hash.c -o utils_hash.o
gcc -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils_matrix.c -o utils_matrix.o
utils_matrix.c:65:13: warning: 'transposeMatrix' defined but not used [-Wunused-function]
65 | static void transposeMatrix(const double *src, int rows, int cols, double *dst)
| ^~~~~~~~~~~~~~~
gcc -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils_multivariate.c -o utils_multivariate.o
utils_multivariate.c: In function 'getAverageConditional':
utils_multivariate.c:227:10: warning: unused variable 'trans' [-Wunused-variable]
227 | char trans = 'N'; // (There's no separate transpose flag in dger,
| ^~~~~
In file included from D:/RCompile/recent/R-4.4.3/include/R.h:78,
from utils_multivariate.c:24:
utils_multivariate.c: In function 'getMahanalobisDist':
utils_multivariate.c:318:14: warning: '<unknown>' may be used uninitialized [-Wmaybe-uninitialized]
318 | F77_CALL(dsymv)(&uplo, &n, &alpha, inverseSigma->data, &lda, diff, &incx, &beta, temp, &incy FCONE);
| ^
D:/RCompile/recent/R-4.4.3/include/R_ext/RS.h:104:25: note: in definition of macro 'F77_CALL'
104 | # define F77_CALL(x) x ## _
| ^
D:/RCompile/recent/R-4.4.3/include/R_ext/BLAS.h:144:10: note: by argument 6 of type 'const double *' to 'dsymv_' declared here
144 | F77_NAME(dsymv)(const char *uplo, const BLAS_INT *n, const double *alpha,
| ^~~~~
D:/RCompile/recent/R-4.4.3/include/R_ext/RS.h:104:25: note: in definition of macro 'F77_CALL'
104 | # define F77_CALL(x) x ## _
| ^
D:/RCompile/recent/R-4.4.3/include/R_ext/BLAS.h:144:1: note: in expansion of macro 'F77_NAME'
144 | F77_NAME(dsymv)(const char *uplo, const BLAS_INT *n, const double *alpha,
| ^~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c wrapper.cpp -o wrapper.o
g++ -std=gnu++17 -shared -s -static-libgcc -o fastei.dll tmp.def RcppExports.o bootstrap.o dynamic_program.o exact.o hitAndRun.o main.o multinomial.o multivariate-cdf.o multivariate-pdf.o utils_hash.o utils_matrix.o utils_multivariate.o wrapper.o -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -fopenmp -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_07_25_01_50_00_22362/RtmpSw8m7j/R.INSTALL2e4e016ec6b9f/fastei/src'
make[1]: Entering directory '/d/temp/2025_07_25_01_50_00_22362/RtmpSw8m7j/R.INSTALL2e4e016ec6b9f/fastei/src'
make[1]: Leaving directory '/d/temp/2025_07_25_01_50_00_22362/RtmpSw8m7j/R.INSTALL2e4e016ec6b9f/fastei/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-fastei/00new/fastei/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'fastei' as fastei_0.0.0.9.zip
* DONE (fastei)