- using R version 4.3.3 (2024-02-29 ucrt)
- using platform: x86_64-w64-mingw32 (64-bit)
- R was compiled by
gcc.exe (GCC) 12.3.0
GNU Fortran (GCC) 12.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'evoTS/DESCRIPTION' ... OK
- this is package 'evoTS' version '1.0.2'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'evoTS' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s] OK
- checking whether the package can be unloaded cleanly ... [2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s] OK
- checking whether the namespace can be unloaded cleanly ... [2s] OK
- checking loading without being on the library search path ... [2s] OK
- checking use of S3 registration ... OK
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- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [26s] OK
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- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
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- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [8s] ERROR
Running examples in 'evoTS-Ex.R' failed
The error most likely occurred in:
> ### Name: fit.mode.shift
> ### Title: Fit two models to two separate segments to an evolutionary
> ### sequence (time-series).
> ### Aliases: fit.mode.shift
>
> ### ** Examples
>
>
> ##Generate a paleoTS object.
> x <- paleoTS::sim.GRW(30)
>
> ## Fit a mode-shift model without defining a shift point (the example may take > 5 seconds to run)
> fit.mode.shift(x, model1="URW", model2="Stasis")
[1] "Searching all possible shift points in the evolutionary sequence"
Total # hypotheses: 17
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
paleoTSfit object [n = 30 , K = 5 ]
Model: URW-Stasis
Method: Joint
log-likelihood = -16.367
AICc = 45.23401
Parameter estimates:
anc vstep theta omega shift1
0.24174626 0.05502436 1.13780580 1.17188788 24.00000000
Error in if (nsh == 1) shn <- "shift" else shn <- paste0("shift", 1:nsh) :
argument is of length zero
Calls: <Anonymous> -> print.paleoTSfit -> showGG
Execution halted
- checking PDF version of manual ... [18s] OK
- checking HTML version of manual ... [9s] OK
- DONE
Status: 1 ERROR