* installing *source* package 'eFCM' ...
** package 'eFCM' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2025_09_15_01_50_00_13893/RtmpkfqRc7/R.INSTALL198a8457f92e/eFCM/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
                 from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
   71 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
      |                                                                                                                                                         ^
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c functions.cpp -o functions.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
                 from functions.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
   71 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
      |                                                                                                                                                         ^
functions.cpp: In function 'arma::vec qF1(const arma::vec&, const arma::vec&)':
functions.cpp:102:21: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
  102 |    for(int i = 0; i < u.size(); i+=1){
      |                   ~~^~~~~~~~~~
functions.cpp: In function 'arma::vec dF1(const arma::vec&, const arma::vec&, const bool&)':
functions.cpp:389:21: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
  389 |      for(int i =0; i<z.size();i+=1){
      |                    ~^~~~~~~~~
functions.cpp: In function 'double dFI(const arma::vec&, const arma::uvec&, const arma::mat&, const arma::vec&, const double&, const bool&)':
functions.cpp:420:9: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  420 |    if(k == sigma.n_cols){
      |       ~~^~~~~~~~~~~~~~~
functions.cpp:450:26: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  450 |        for (int i = 0; i < sigma_I.n_rows; i += 1) {
      |                        ~~^~~~~~~~~~~~~~~~
functions.cpp:451:28: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  451 |          for (int j = 0; j < sigma_I.n_cols; j+= 1) {
      |                          ~~^~~~~~~~~~~~~~~~
functions.cpp: In function 'double log_partialCn(const arma::vec&, const arma::mat&, const arma::vec&, const arma::mat&, const double&)':
functions.cpp:485:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  485 |    for(int i = 0; i < data_u.n_rows; i += 1){
      |                   ~~^~~~~~~~~~~~~~~
functions.cpp: In function 'double Log_Lik_Non(const arma::vec&, const arma::mat&, const arma::mat&, const double&)':
functions.cpp:515:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  515 |    for(int i = 0; i < data_u.n_rows; i += 1){
      |                   ~~^~~~~~~~~~~~~~~
functions.cpp:516:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  516 |      for(int j = 0; j < data_u.n_cols;j += 1){
      |                     ~~^~~~~~~~~~~~~~~
functions.cpp:528:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  528 |    for(int i = 0; i < z.n_rows; i += 1){
      |                   ~~^~~~~~~~~~
functions.cpp:530:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  530 |      for(int j = 0; j < z.n_cols; j += 1){
      |                     ~~^~~~~~~~~~
functions.cpp: In function 'double model_likelihood(const arma::vec&, const arma::mat&, const arma::mat&, const double&, const double&, const bool&)':
functions.cpp:555:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  555 |      for(int i = 0; i < data_u.n_cols; i += 1){
      |                     ~~^~~~~~~~~~~~~~~
functions.cpp:578:25: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  578 |          if(bvec.size() == n1){
      |             ~~~~~~~~~~~~^~~~~
functions.cpp: In function 'Rcpp::List fit_initial(arma::mat, arma::mat, const arma::uvec&)':
functions.cpp:646:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  646 |    for(int i = 0; i < data.n_rows; i += 1){
      |                   ~~^~~~~~~~~~~~~
functions.cpp:656:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  656 |    for(int i = 0; i < data.n_cols; i += 1){
      |                   ~~^~~~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o eFCM.dll tmp.def RcppExports.o functions.o -fopenmp -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_09_15_01_50_00_13893/RtmpkfqRc7/R.INSTALL198a8457f92e/eFCM/src'
make[1]: Entering directory '/d/temp/2025_09_15_01_50_00_13893/RtmpkfqRc7/R.INSTALL198a8457f92e/eFCM/src'
make[1]: Leaving directory '/d/temp/2025_09_15_01_50_00_13893/RtmpkfqRc7/R.INSTALL198a8457f92e/eFCM/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-eFCM/00new/eFCM/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'eFCM' as eFCM_1.0.zip
* DONE (eFCM)