- using R version 4.4.3 (2025-02-28 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'clc/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'clc' version '1.0.0'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'clc' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s] OK
- checking whether the package can be unloaded cleanly ... [0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s] OK
- checking whether the namespace can be unloaded cleanly ... [1s] OK
- checking loading without being on the library search path ... [0s] OK
- checking whether startup messages can be suppressed ... [0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [3s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [9s] ERROR
Running examples in 'clc-Ex.R' failed
The error most likely occurred in:
> ### Name: as_raster
> ### Title: Convert a 'clc' Object to Raster Format
> ### Aliases: as_raster as_raster.clc
>
> ### ** Examples
>
> source_gpkg <- system.file("extdata", "clc.gpkg", package = "clc")
> clo <- clc(source = source_gpkg, layer_name = "clc")
>
> raster_path <- system.file("extdata", "mdt.tif", package = "clc")
> base_raster <- terra::rast(raster_path)
>
> # ex1
> r <- clo |>
+ as_raster(base_raster = base_raster)
Warning in CPL_transform(x, crs, aoi, pipeline, reverse, desired_accuracy, :
GDAL Error 6: Cannot find coordinate operations from `{
"$schema": "https://proj.org/schemas/v0.7/projjson.schema.json",
"type": "EngineeringCRS",
"name": "ETRS89 / UTM zone 30N (N-E)",
"datum": {
"name": "Unknown engineering datum"
},
"coordinate_system": {
"subtype": "Cartesian",
"axis": [
{
"name": "Easting",
"abbreviation": "E",
"direction": "east",
"unit": "metre"
},
{
"name": "Northing",
"abbreviation": "N",
"direction": "north",
"unit": "metre"
}
]
}
}' to `EPSG:25830'
Warning in CPL_transform(x, crs, aoi, pipeline, reverse, desired_accuracy, :
GDAL Error 6: Cannot find coordinate operations from `{
"$schema": "https://proj.org/schemas/v0.7/projjson.schema.json",
"type": "EngineeringCRS",
"name": "ETRS89 / UTM zone 30N (N-E)",
"datum": {
"name": "Unknown engineering datum"
},
"coordinate_system": {
"subtype": "Cartesian",
"axis": [
{
"name": "Easting",
"abbreviation": "E",
"direction": "east",
"unit": "metre"
},
{
"name": "Northing",
"abbreviation": "N",
"direction": "north",
"unit": "metre"
}
]
}
}' to `EPSG:25830'
Error: OGRCreateCoordinateTransformation(): transformation not available
Execution halted
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [22s] ERROR
Running 'testthat.R' [22s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(clc)
>
> test_check("clc")
Saving _problems/test-clc-97.R
Writing layer `clc' to data source
`D:\temp\2025_12_05_01_50_00_7414\RtmpKWs7ms\file453446f65853.gpkg' using driver `GPKG'
Writing 136 features with 2 fields and geometry type Multi Polygon.
Writing layer `clc' to data source
`D:\temp\2025_12_05_01_50_00_7414\RtmpKWs7ms\file4534185361c7.gpkg' using driver `GPKG'
Writing 136 features with 2 fields and geometry type Multi Polygon.
Saving _problems/test-clc_raster-7.R
Saving _problems/test-clc_raster-89.R
[ FAIL 3 | WARN 6 | SKIP 0 | PASS 162 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-clc.R:97:3'): as_raster converts clc object to raster format ───
<Rcpp::exception/C++Error/error/condition>
Error: OGRCreateCoordinateTransformation(): transformation not available
Backtrace:
▆
1. ├─clc::as_raster(clo, base_raster = base_raster) at test-clc.R:97:3
2. └─clc:::as_raster.clc(clo, base_raster = base_raster)
3. └─clc:::clc_raster(...)
4. └─clc:::vector_to_raster_layers(...)
5. └─clc::safe_clip_multipoligon(vector_layer, bbox_raster)
6. └─base::tryCatch(...)
7. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. └─value[[3L]](cond)
10. └─clc:::clip_vector(v, polygon)
11. ├─sf::st_transform(polygon, sf::st_crs(vector))
12. └─sf:::st_transform.sf(polygon, sf::st_crs(vector))
13. ├─sf::st_transform(st_geometry(x), crs, ...)
14. └─sf:::st_transform.sfc(st_geometry(x), crs, ...)
15. ├─sf::st_sfc(...)
16. ├─base::structure(...)
17. └─sf:::CPL_transform(...)
── Error ('test-clc_raster.R:7:3'): vector_to_raster_layers works correctly with base raster ──
<Rcpp::exception/C++Error/error/condition>
Error: OGRCreateCoordinateTransformation(): transformation not available
Backtrace:
▆
1. └─clc:::vector_to_raster_layers(...) at test-clc_raster.R:7:3
2. └─clc::safe_clip_multipoligon(vector_layer, bbox_raster)
3. └─base::tryCatch(...)
4. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
6. └─value[[3L]](cond)
7. └─clc:::clip_vector(v, polygon)
8. ├─sf::st_transform(polygon, sf::st_crs(vector))
9. └─sf:::st_transform.sf(polygon, sf::st_crs(vector))
10. ├─sf::st_transform(st_geometry(x), crs, ...)
11. └─sf:::st_transform.sfc(st_geometry(x), crs, ...)
12. ├─sf::st_sfc(...)
13. ├─base::structure(...)
14. └─sf:::CPL_transform(...)
── Error ('test-clc_raster.R:88:3'): clc_raster creates an object correctly ────
<Rcpp::exception/C++Error/error/condition>
Error: OGRCreateCoordinateTransformation(): transformation not available
Backtrace:
▆
1. ├─clc::as_raster(clo, base_raster = base_raster) at test-clc_raster.R:88:3
2. └─clc:::as_raster.clc(clo, base_raster = base_raster)
3. └─clc:::clc_raster(...)
4. └─clc:::vector_to_raster_layers(...)
5. └─clc::safe_clip_multipoligon(vector_layer, bbox_raster)
6. └─base::tryCatch(...)
7. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. └─value[[3L]](cond)
10. └─clc:::clip_vector(v, polygon)
11. ├─sf::st_transform(polygon, sf::st_crs(vector))
12. └─sf:::st_transform.sf(polygon, sf::st_crs(vector))
13. ├─sf::st_transform(st_geometry(x), crs, ...)
14. └─sf:::st_transform.sfc(st_geometry(x), crs, ...)
15. ├─sf::st_sfc(...)
16. ├─base::structure(...)
17. └─sf:::CPL_transform(...)
[ FAIL 3 | WARN 6 | SKIP 0 | PASS 162 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [23s] ERROR
Error(s) in re-building vignettes:
--- re-building 'clc.Rmd' using rmarkdown
Quitting from clc.Rmd:280-286 [example-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! OGRCreateCoordinateTransformation(): transformation not available
---
Backtrace:
▆
1. ├─clc::as_raster(clc_clipped, base_raster = base_raster)
2. └─clc:::as_raster.clc(clc_clipped, base_raster = base_raster)
3. └─clc:::clc_raster(...)
4. └─clc:::vector_to_raster_layers(...)
5. └─clc::safe_clip_multipoligon(vector_layer, bbox_raster)
6. └─base::tryCatch(...)
7. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. └─value[[3L]](cond)
10. └─clc:::clip_vector(v, polygon)
11. ├─sf::st_transform(polygon, sf::st_crs(vector))
12. └─sf:::st_transform.sf(polygon, sf::st_crs(vector))
13. ├─sf::st_transform(st_geometry(x), crs, ...)
14. └─sf:::st_transform.sfc(st_geometry(x), crs, ...)
15. ├─sf::st_sfc(...)
16. ├─base::structure(...)
17. └─sf:::CPL_transform(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'clc.Rmd' failed with diagnostics:
OGRCreateCoordinateTransformation(): transformation not available
--- failed re-building 'clc.Rmd'
SUMMARY: processing the following file failed:
'clc.Rmd'
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [23s] OK
- checking HTML version of manual ... [2s] OK
- DONE
Status: 3 ERRORs