- using R version 4.4.3 (2025-02-28 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'bundle/DESCRIPTION' ... OK
- this is package 'bundle' version '0.1.2'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'bundle' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s] OK
- checking whether the package can be unloaded cleanly ... [1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s] OK
- checking loading without being on the library search path ... [1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [3s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [10s] ERROR
Running examples in 'bundle-Ex.R' failed
The error most likely occurred in:
> ### Name: bundle.model_fit
> ### Title: Bundle a parsnip 'model_fit' object
> ### Aliases: bundle.model_fit bundle_model_fit
>
> ### ** Examples
>
> ## Don't show:
> if (rlang::is_installed("parsnip") && rlang::is_installed("xgboost")) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ # fit model and bundle ------------------------------------------------
+ library(parsnip)
+ library(xgboost)
+
+ set.seed(1)
+
+ mod <-
+ boost_tree(trees = 5, mtry = 3) %>%
+ set_mode("regression") %>%
+ set_engine("xgboost") %>%
+ fit(mpg ~ ., data = mtcars)
+
+ mod_bundle <- bundle(mod)
+
+ # then, after saveRDS + readRDS or passing to a new session ----------
+ mod_unbundled <- unbundle(mod_bundle)
+
+ mod_unbundled_preds <- predict(mod_unbundled, new_data = mtcars)
+ ## Don't show:
+ }) # examplesIf
> library(parsnip)
> library(xgboost)
> set.seed(1)
> mod <- boost_tree(trees = 5, mtry = 3) %>% set_mode("regression") %>%
+ set_engine("xgboost") %>% fit(mpg ~ ., data = mtcars)
> mod_bundle <- bundle(mod)
> mod_unbundled <- unbundle(mod_bundle)
Error in xgboost::xgb.load.raw(object, as_booster = TRUE) :
unused argument (as_booster = TRUE)
Calls: <Anonymous> ... <Anonymous> -> unbundle -> unbundle.bundle -> <Anonymous>
Execution halted
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [146s] ERROR
Running 'testthat.R' [146s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(bundle)
>
> test_check("bundle")
Loading required package: ggplot2
Loading required package: lattice
Attaching package: 'parsnip'
The following object is masked from 'package:dbarts':
bart
Saving _problems/test_bundle_parsnip-47.R
Loading required package: dplyr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Attaching package: 'recipes'
The following object is masked from 'package:stats':
step
Saving _problems/test_bundle_workflows-69.R
Saving _problems/test_bundle_xgboost-33.R
Saving _problems/test_utils-43.R
[ FAIL 4 | WARN 0 | SKIP 11 | PASS 24 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• !interactive() is TRUE (4): 'test_bundle_h2o.R:137:3',
'test_bundle_h2o.R:284:3', 'test_bundle_h2o.R:428:3',
'test_bundle_h2o.R:564:3'
• On CRAN (7): 'test_bundle_bart.R:100:1', 'test_bundle_bart.R:106:1',
'test_bundle_embed.R:2:3', 'test_bundle_h2o.R:2:3',
'test_bundle_keras.R:2:3', 'test_bundle_torch.R:6:3',
'test_bundle_workflows.R:126:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_bundle_parsnip.R:34:3'): bundling + unbundling parsnip model_fits (xgboost) ──
<callr_status_error/callr_error/rlib_error_3_0/rlib_error/error/condition>
Error: ! in callr subprocess.
Caused by error in `xgboost::xgb.load.raw(object, as_booster = TRUE)`:
! unused argument (as_booster = TRUE)
Backtrace:
▆
1. └─callr::r(...) at test_bundle_parsnip.R:34:3
2. └─callr:::get_result(output = out, options)
3. └─throw(callr_remote_error(remerr, output), parent = fix_msg(remerr[[3]]))
── Error ('test_bundle_workflows.R:53:3'): bundling + unbundling tidymodels workflows (xgboost + step_log) ──
<callr_status_error/callr_error/rlib_error_3_0/rlib_error/error/condition>
Error: ! in callr subprocess.
Caused by error in `xgboost::xgb.load.raw(object, as_booster = TRUE)`:
! unused argument (as_booster = TRUE)
Backtrace:
▆
1. └─callr::r(...) at test_bundle_workflows.R:53:3
2. └─callr:::get_result(output = out, options)
3. └─throw(callr_remote_error(remerr, output), parent = fix_msg(remerr[[3]]))
── Error ('test_bundle_xgboost.R:23:3'): bundling + unbundling xgboost fits ────
<callr_status_error/callr_error/rlib_error_3_0/rlib_error/error/condition>
Error: ! in callr subprocess.
Caused by error in `process.y.margin.and.objective(y, base_margin, objective, params)`:
! Got numeric 'y' - supported objectives for this data are: reg:squarederror, reg:squaredlogerror, reg:logistic, reg:pseudohubererror, reg:absoluteerror, reg:quantileerror, count:poisson, reg:gamma, reg:tweedie. Was passed: binary:logistic
Backtrace:
▆
1. └─callr::r(...) at test_bundle_xgboost.R:23:3
2. └─callr:::get_result(output = out, options)
3. └─throw(callr_remote_error(remerr, output), parent = fix_msg(remerr[[3]]))
── Error ('test_utils.R:43:3'): swap_element works ─────────────────────────────
Error in `xgboost::xgb.load.raw(object, as_booster = TRUE)`: unused argument (as_booster = TRUE)
Backtrace:
▆
1. └─bundle::swap_element(res, "fit") at test_utils.R:43:3
2. ├─bundle::unbundle(component)
3. └─bundle:::unbundle.bundle(component)
4. └─x$situate(get_object(x))
[ FAIL 4 | WARN 0 | SKIP 11 | PASS 24 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [28s] OK
- checking PDF version of manual ... [25s] OK
- checking HTML version of manual ... [4s] OK
- DONE
Status: 2 ERRORs