* installing *source* package 'bigPCAcpp' ... ** package 'bigPCAcpp' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 13.3.0' make[1]: Entering directory '/d/temp/2025_12_29_16_12_34_1110/Rtmp8U9DUr/R.INSTALL14f6c6cf636f9/bigPCAcpp/src' g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/bigmemory/include' -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/bigmemory/include' -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pca.cpp -o pca.o In file included from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/shared_ptr.hpp:17, from D:/RCompile/CRANpkg/lib/4.4/bigmemory/include/bigmemory/BigMatrix.h:10, from pca.cpp:4: D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:294:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 294 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\memory:78, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:23: d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:354:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 354 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:365:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 365 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:423:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 423 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:430:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 430 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)': D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:432:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 432 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pca.cpp: In function 'void {anonymous}::ensure_double_matrix(BigMatrix*, const char*, std::size_t, std::size_t)': pca.cpp:1314:19: warning: comparison of integer expressions of different signedness: 'index_type' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 1314 | if (ptr->nrow() != expected_rows || ptr->ncol() != expected_cols) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ pca.cpp:1314:51: warning: comparison of integer expressions of different signedness: 'index_type' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 1314 | if (ptr->nrow() != expected_rows || ptr->ncol() != expected_cols) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/bigmemory/include' -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svd_robust.cpp -o svd_robust.o g++ -std=gnu++17 -shared -s -static-libgcc -o bigPCAcpp.dll tmp.def RcppExports.o pca.o svd_robust.o -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3/bin/x64 -lR make[1]: Leaving directory '/d/temp/2025_12_29_16_12_34_1110/Rtmp8U9DUr/R.INSTALL14f6c6cf636f9/bigPCAcpp/src' make[1]: Entering directory '/d/temp/2025_12_29_16_12_34_1110/Rtmp8U9DUr/R.INSTALL14f6c6cf636f9/bigPCAcpp/src' make[1]: Leaving directory '/d/temp/2025_12_29_16_12_34_1110/Rtmp8U9DUr/R.INSTALL14f6c6cf636f9/bigPCAcpp/src' installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-bigPCAcpp/00new/bigPCAcpp/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'bigPCAcpp' as bigPCAcpp_0.9.0.zip * DONE (bigPCAcpp)