- using R version 4.4.3 (2025-02-28 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'amt/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'amt' version '0.3.0.0'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'amt' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [4s] OK
- checking whether the package can be loaded with stated dependencies ... [3s] OK
- checking whether the package can be unloaded cleanly ... [4s] OK
- checking whether the namespace can be loaded with stated dependencies ... [4s] OK
- checking whether the namespace can be unloaded cleanly ... [4s] OK
- checking loading without being on the library search path ... [5s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [21s] OK
- checking Rd files ... [6s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [8s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [34s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [39s] OK
Running 'tinytest.R' [39s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [109s] ERROR
Error(s) in re-building vignettes:
--- re-building 'p1_getting_started.Rmd' using rmarkdown
ERROR: Unknown command "TMPDIR=D:/temp/2025_12_29_16_12_34_1110/RtmpwJ2Ufy/filef2085bd84159". Did you mean command "preview"?
--- finished re-building 'p1_getting_started.Rmd'
--- re-building 'p2_hr.Rmd' using rmarkdown
ERROR: Unknown command "TMPDIR=D:/temp/2025_12_29_16_12_34_1110/Rtmp8i97A1/file36c82df54aca". Did you mean command "preview"?
--- finished re-building 'p2_hr.Rmd'
--- re-building 'p3_rsf.Rmd' using rmarkdown
ERROR: Unknown command "TMPDIR=D:/temp/2025_12_29_16_12_34_1110/RtmpMl2l1l/file5c4013064a4e". Did you mean command "preview"?
--- finished re-building 'p3_rsf.Rmd'
--- re-building 'p4_SSF.Rmd' using rmarkdown
ERROR: Unknown command "TMPDIR=D:/temp/2025_12_29_16_12_34_1110/Rtmps3Sm0H/file168d47d4a4171". Did you mean command "preview"?
--- finished re-building 'p4_SSF.Rmd'
--- re-building 'p5_other_packages.Rmd' using rmarkdown
ERROR: Unknown command "TMPDIR=D:/temp/2025_12_29_16_12_34_1110/RtmpGqzp5H/file1469c760e2892". Did you mean command "preview"?
--- finished re-building 'p5_other_packages.Rmd'
--- re-building 'p6_uhc_plots.Rmd' using rmarkdown
Quitting from p6_uhc_plots.Rmd:60-78 [habitat]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! [rast] empty srs
---
Backtrace:
▆
1. ├─terra::rast(uhc_hab, type = "xyz", crs = "epsg:32612")
2. └─terra::rast(uhc_hab, type = "xyz", crs = "epsg:32612")
3. └─terra (local) .local(x, ...)
4. └─terra:::.rastFromXYZ(x, crs = crs, digits = digits, extent = extent)
5. ├─terra::rast(...)
6. └─terra::rast(...)
7. └─terra (local) .local(x = x, ...)
8. └─terra:::new_rast(...)
9. └─terra:::messages(r, "rast")
10. └─terra:::error(f, x@pntr$getError())
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'p6_uhc_plots.Rmd' failed with diagnostics:
[rast] empty srs
--- failed re-building 'p6_uhc_plots.Rmd'
SUMMARY: processing the following file failed:
'p6_uhc_plots.Rmd'
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [22s] OK
- checking HTML version of manual ... [20s] OK
- DONE
Status: 1 ERROR