- using R version 4.4.3 (2025-02-28 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'TreeSearch/DESCRIPTION' ... OK
- this is package 'TreeSearch' version '1.6.1'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'TreeSearch' can be installed ... OK
See the install log for details.
- used C compiler: 'gcc.exe (GCC) 13.3.0'
- used C++ compiler: 'g++.exe (GCC) 13.3.0'
- checking C++ specification ... OK
Not all R platforms support C++17
- checking installed package size ... NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
datasets 1.6Mb
doc 1.3Mb
libs 1.1Mb
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s] OK
- checking whether the package can be loaded with stated dependencies ... [3s] OK
- checking whether the package can be unloaded cleanly ... [2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s] OK
- checking whether the namespace can be unloaded cleanly ... [3s] OK
- checking loading without being on the library search path ... [3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [18s] OK
- checking Rd files ... [8s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [2s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compiled code ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [22s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [79s] ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [78s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library("testthat")
> library("TreeSearch")
>
> test_check("TreeSearch")
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 7330 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test-Jackknife.R:42:3', 'test-PlotCharacter.R:46:7',
'test-PlotCharacter.R:143:3', 'test-PlotCharacter.R:177:3'
• Sys.getenv("GITHUB_PAT") == "" is TRUE (1): 'test-MaximizeParsimony.R:71:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-CustomSearch.R:32:3'): Tree can be found ─────────────────────
all.equal(...) is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 7330 ]
Deleting unused snapshots:
• PlotCharacter/plotchar-000011110000.svg
• PlotCharacter/plotchar-000011qqqq00.svg
• PlotCharacter/plotchar-011iiqii0011.svg
• PlotCharacter/plotchar-01iii1010101.svg
• PlotCharacter/plotchar-01iiii010101.svg
• PlotCharacter/plotchar-01iiiiii0101.svg
• PlotCharacter/plotchar-023iiqq1ii32.svg
• PlotCharacter/plotchar-023iqqq1ii32.svg
• PlotCharacter/plotchar-10101iiiii01.svg
• PlotCharacter/plotchar-10iiii11iii1.svg
• PlotCharacter/plotchar-1100iiii1100.svg
• PlotCharacter/plotchar-110iiqiii100.svg
• PlotCharacter/plotchar-110iiqqii100.svg
• PlotCharacter/plotchar-11ii1000001i.svg
• PlotCharacter/plotchar-11ii1qqii111.svg
• PlotCharacter/plotchar-11iiii111111.svg
• PlotCharacter/plotchar-11iiiiiii100.svg
• PlotCharacter/plotchar-11iiqqqqii11.svg
• PlotCharacter/plotchar-1234d45baacgttt.svg
• PlotCharacter/plotchar-1iii1111iii1.svg
• PlotCharacter/plotchar-1iiii1iiii1i.svg
• PlotCharacter/plotchar-1qqiiqqii100.svg
• PlotCharacter/plotchar-210210iiiiii.svg
• PlotCharacter/plotchar-210ii100ii21.svg
• PlotCharacter/plotchar-21ii1iiii012.svg
• PlotCharacter/plotchar-21ii3qqii032.svg
• PlotCharacter/plotchar-230iiqq1ii32.svg
• PlotCharacter/plotchar-23ii1iiii032.svg
• PlotCharacter/plotchar-23ii1q1ii023.svg
• PlotCharacter/plotchar-23ii1qqdi0bid01b32.svg
• PlotCharacter/plotchar-23qq1qqqq032.svg
• PlotCharacter/plotchar-320iiqq3ii21.svg
• PlotCharacter/plotchar-i1i1i1ii1i1i.svg
• PlotCharacter/plotchar-iiii1010iiii.svg
• PlotCharacter/plotchar-iiii1111iii1.svg
• PlotCharacter/plotchar-iiii1111iiii.svg
• PlotCharacter/plotchar-iiiiii11iii1.svg
• PlotCharacter/plotchar-iiiiiiii0101.svg
• PlotCharacter/plotchar-iiiiiiiiiiii.svg
• PlotCharacter/plotchar-iiiiiiiqqqqq.svg
• PlotCharacter/plotchar-invar-ambig.svg
• PlotCharacter/plotchar-invariant.svg
• PlotCharacter/plotchar-qqqqiiii1qqq.svg
• PlotCharacter/plotchar-qqqqqqqqqqqq.svg
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [114s] OK
- checking PDF version of manual ... [26s] OK
- checking HTML version of manual ... [18s] OK
- DONE
Status: 1 ERROR, 1 NOTE