* installing *source* package 'TreeDist' ... ** package 'TreeDist' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 13.3.0' using C++17 make[1]: Entering directory '/d/temp/2025_09_12_01_50_00_19423/RtmpwPm94P/R.INSTALL1d6ec43987036/TreeDist/src' g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c day_1985.cpp -o day_1985.o In file included from tree_distances.h:4, from day_1985.cpp:4: D:/RCompile/CRANpkg/lib/4.4/TreeTools/include/TreeTools/SplitList.h:45:16: warning: 'TreeTools::bitcounts' defined but not used [-Wunused-variable] 45 | static int16 bitcounts[65536]; | ^~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lap.cpp -o lap.o In file included from tree_distances.h:4, from lap.cpp:29: D:/RCompile/CRANpkg/lib/4.4/TreeTools/include/TreeTools/SplitList.h:45:16: warning: 'TreeTools::bitcounts' defined but not used [-Wunused-variable] 45 | static int16 bitcounts[65536]; | ^~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mast.cpp -o mast.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nni_distance.cpp -o nni_distance.o In file included from nni_distance.cpp:2: D:/RCompile/CRANpkg/lib/4.4/TreeTools/include/TreeTools/SplitList.h:45:16: warning: 'TreeTools::bitcounts' defined but not used [-Wunused-variable] 45 | static int16 bitcounts[65536]; | ^~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c path_vector.cpp -o path_vector.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c reduce_tree.cpp -o reduce_tree.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spr.cpp -o spr.o In file included from spr.cpp:6: D:/RCompile/CRANpkg/lib/4.4/TreeTools/include/TreeTools/SplitList.h:45:16: warning: 'TreeTools::bitcounts' defined but not used [-Wunused-variable] 45 | static int16 bitcounts[65536]; | ^~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tree_distance_functions.cpp -o tree_distance_functions.o In file included from tree_distance_functions.cpp:2: D:/RCompile/CRANpkg/lib/4.4/TreeTools/include/TreeTools/SplitList.h:45:16: warning: 'TreeTools::bitcounts' defined but not used [-Wunused-variable] 45 | static int16 bitcounts[65536]; | ^~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tree_distances.cpp -o tree_distances.o In file included from tree_distances.cpp:1: D:/RCompile/CRANpkg/lib/4.4/TreeTools/include/TreeTools/SplitList.h:45:16: warning: 'TreeTools::bitcounts' defined but not used [-Wunused-variable] 45 | static int16 bitcounts[65536]; | ^~~~~~~~~ g++ -shared -s -static-libgcc -o TreeDist.dll tmp.def RcppExports.o day_1985.o lap.o mast.o nni_distance.o path_vector.o reduce_tree.o spr.o tree_distance_functions.o tree_distances.o -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3/bin/x64 -lR make[1]: Leaving directory '/d/temp/2025_09_12_01_50_00_19423/RtmpwPm94P/R.INSTALL1d6ec43987036/TreeDist/src' make[1]: Entering directory '/d/temp/2025_09_12_01_50_00_19423/RtmpwPm94P/R.INSTALL1d6ec43987036/TreeDist/src' make[1]: Leaving directory '/d/temp/2025_09_12_01_50_00_19423/RtmpwPm94P/R.INSTALL1d6ec43987036/TreeDist/src' installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-TreeDist/00new/TreeDist/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'TreeDist' as TreeDist_2.10.1.zip * DONE (TreeDist)