* installing *source* package 'TreeDist' ...
** package 'TreeDist' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
using C++17
make[1]: Entering directory '/d/temp/2025_09_17_01_50_00_21129/RtmpIR2G3g/R.INSTALL52d4dc77674/TreeDist/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c day_1985.cpp -o day_1985.o
In file included from tree_distances.h:4,
from day_1985.cpp:4:
D:/RCompile/CRANpkg/lib/4.4/TreeTools/include/TreeTools/SplitList.h:45:16: warning: 'TreeTools::bitcounts' defined but not used [-Wunused-variable]
45 | static int16 bitcounts[65536];
| ^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lap.cpp -o lap.o
In file included from tree_distances.h:4,
from lap.cpp:29:
D:/RCompile/CRANpkg/lib/4.4/TreeTools/include/TreeTools/SplitList.h:45:16: warning: 'TreeTools::bitcounts' defined but not used [-Wunused-variable]
45 | static int16 bitcounts[65536];
| ^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mast.cpp -o mast.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nni_distance.cpp -o nni_distance.o
In file included from nni_distance.cpp:2:
D:/RCompile/CRANpkg/lib/4.4/TreeTools/include/TreeTools/SplitList.h:45:16: warning: 'TreeTools::bitcounts' defined but not used [-Wunused-variable]
45 | static int16 bitcounts[65536];
| ^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c path_vector.cpp -o path_vector.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c reduce_tree.cpp -o reduce_tree.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spr.cpp -o spr.o
In file included from spr.cpp:6:
D:/RCompile/CRANpkg/lib/4.4/TreeTools/include/TreeTools/SplitList.h:45:16: warning: 'TreeTools::bitcounts' defined but not used [-Wunused-variable]
45 | static int16 bitcounts[65536];
| ^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tree_distance_functions.cpp -o tree_distance_functions.o
In file included from tree_distance_functions.cpp:2:
D:/RCompile/CRANpkg/lib/4.4/TreeTools/include/TreeTools/SplitList.h:45:16: warning: 'TreeTools::bitcounts' defined but not used [-Wunused-variable]
45 | static int16 bitcounts[65536];
| ^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/TreeTools/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tree_distances.cpp -o tree_distances.o
In file included from tree_distances.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/TreeTools/include/TreeTools/SplitList.h:45:16: warning: 'TreeTools::bitcounts' defined but not used [-Wunused-variable]
45 | static int16 bitcounts[65536];
| ^~~~~~~~~
g++ -shared -s -static-libgcc -o TreeDist.dll tmp.def RcppExports.o day_1985.o lap.o mast.o nni_distance.o path_vector.o reduce_tree.o spr.o tree_distance_functions.o tree_distances.o -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_09_17_01_50_00_21129/RtmpIR2G3g/R.INSTALL52d4dc77674/TreeDist/src'
make[1]: Entering directory '/d/temp/2025_09_17_01_50_00_21129/RtmpIR2G3g/R.INSTALL52d4dc77674/TreeDist/src'
make[1]: Leaving directory '/d/temp/2025_09_17_01_50_00_21129/RtmpIR2G3g/R.INSTALL52d4dc77674/TreeDist/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-TreeDist/00new/TreeDist/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'TreeDist' as TreeDist_2.10.1.zip
* DONE (TreeDist)