* installing *source* package 'SemiCompRisks' ...
** package 'SemiCompRisks' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.3.0'
make[1]: Entering directory '/d/temp/2024_12_08_01_50_00_8402/Rtmps3nLN1/R.INSTALL20d8050f9492b/SemiCompRisks/src'
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BAFT_DPscr.c -o BAFT_DPscr.o
BAFT_DPscr.c: In function 'BAFT_DPscrmcmc':
BAFT_DPscr.c:120:22: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
  120 |     gsl_matrix *X1 = gsl_matrix_calloc(*n, (nP1));
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr.c:111:9: note: 'nP1' was declared here
  111 |     int nP1, nP2, nP3;
      |         ^~~
BAFT_DPscr.c:121:22: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
  121 |     gsl_matrix *X2 = gsl_matrix_calloc(*n, (nP2));
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr.c:111:14: note: 'nP2' was declared here
  111 |     int nP1, nP2, nP3;
      |              ^~~
BAFT_DPscr.c:122:22: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
  122 |     gsl_matrix *X3 = gsl_matrix_calloc(*n, (nP3));
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr.c:111:19: note: 'nP3' was declared here
  111 |     int nP1, nP2, nP3;
      |                   ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BAFT_DPscr_Updates.c -o BAFT_DPscr_Updates.o
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_mu_zeta3':
BAFT_DPscr_Updates.c:1574:42: warning: variable 'LL_negInf' set but not used [-Wunused-but-set-variable]
 1574 |     int i, j, k, n_ir, r_ind, wh_ri, u_, LL_negInf;
      |                                          ^~~~~~~~~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_beta1':
BAFT_DPscr_Updates.c:78:22: warning: 'ii' may be used uninitialized [-Wmaybe-uninitialized]
   78 |         mean = eta + gsl_vector_get(mu1_all, ii);
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:43:22: note: 'ii' was declared here
   43 |     int i, j, uu, k, ii;
      |                      ^~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_beta2':
BAFT_DPscr_Updates.c:178:22: warning: 'ii' may be used uninitialized [-Wmaybe-uninitialized]
  178 |         mean = eta + gsl_vector_get(mu2_all, ii);
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:143:22: note: 'ii' was declared here
  143 |     int i, j, uu, k, ii;
      |                      ^~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_beta3':
BAFT_DPscr_Updates.c:286:30: warning: 'ii' may be used uninitialized [-Wmaybe-uninitialized]
  286 |                 mean = eta + gsl_vector_get(mu3_all, ii);
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:244:22: note: 'ii' was declared here
  244 |     int i, j, uu, k, ii;
      |                      ^~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_mu_zeta1':
BAFT_DPscr_Updates.c:1029:31: warning: 'temp_prop' may be used uninitialized [-Wmaybe-uninitialized]
 1029 |                     temp_prop -= pnorm(gsl_vector_get(c0, i), mean_prop, sd, 0, 1);
      |                               ^~
BAFT_DPscr_Updates.c:990:56: note: 'temp_prop' was declared here
  990 |     double mu_prop, zeta_prop, mu_ini, zeta_ini, temp, temp_prop;
      |                                                        ^~~~~~~~~
BAFT_DPscr_Updates.c:1028:26: warning: 'temp' may be used uninitialized [-Wmaybe-uninitialized]
 1028 |                     temp -= pnorm(gsl_vector_get(c0, i), mean, sd, 0, 1);
      |                          ^~
BAFT_DPscr_Updates.c:990:50: note: 'temp' was declared here
  990 |     double mu_prop, zeta_prop, mu_ini, zeta_ini, temp, temp_prop;
      |                                                  ^~~~
BAFT_DPscr_Updates.c:827:29: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized]
  827 |                         val /= pnorm(gsl_vector_get(c0, i), mean, sd, 0, 0);
      |                             ^~
BAFT_DPscr_Updates.c:742:28: note: 'val' was declared here
  742 |     double b_mc, sum_prob, val, mu, zeta, eta, cond;
      |                            ^~~
BAFT_DPscr_Updates.c:778:12: warning: 'wh_ri' may be used uninitialized [-Wmaybe-uninitialized]
  778 |         if(gsl_vector_get(r1Uniq_count, wh_ri) > 1) /* not singleton */
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:741:31: note: 'wh_ri' was declared here
  741 |     int i, j, k, n_ir, r_ind, wh_ri, u_, LL_negInf;
      |                               ^~~~~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_mu_zeta2':
BAFT_DPscr_Updates.c:1449:31: warning: 'temp_prop' may be used uninitialized [-Wmaybe-uninitialized]
 1449 |                     temp_prop -= pnorm(gsl_vector_get(c0, i), mean_prop, sd, 0, 1);
      |                               ^~
BAFT_DPscr_Updates.c:1410:56: note: 'temp_prop' was declared here
 1410 |     double mu_prop, zeta_prop, mu_ini, zeta_ini, temp, temp_prop;
      |                                                        ^~~~~~~~~
BAFT_DPscr_Updates.c:1448:26: warning: 'temp' may be used uninitialized [-Wmaybe-uninitialized]
 1448 |                     temp -= pnorm(gsl_vector_get(c0, i), mean, sd, 0, 1);
      |                          ^~
BAFT_DPscr_Updates.c:1410:50: note: 'temp' was declared here
 1410 |     double mu_prop, zeta_prop, mu_ini, zeta_ini, temp, temp_prop;
      |                                                  ^~~~
BAFT_DPscr_Updates.c:1247:29: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized]
 1247 |                         val /= pnorm(gsl_vector_get(c0, i), mean, sd, 0, 0);
      |                             ^~
BAFT_DPscr_Updates.c:1160:28: note: 'val' was declared here
 1160 |     double b_mc, sum_prob, val, mu, zeta, eta, cond;
      |                            ^~~
BAFT_DPscr_Updates.c:1196:12: warning: 'wh_ri' may be used uninitialized [-Wmaybe-uninitialized]
 1196 |         if(gsl_vector_get(r2Uniq_count, wh_ri) > 1) /* not singleton */
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:1159:31: note: 'wh_ri' was declared here
 1159 |     int i, j, k, n_ir, r_ind, wh_ri, u_, LL_negInf;
      |                               ^~~~~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_mu_zeta3':
BAFT_DPscr_Updates.c:1713:23: warning: 'wh_ri' may be used uninitialized [-Wmaybe-uninitialized]
 1713 |                     if(j == wh_ri)
      |                       ^
BAFT_DPscr_Updates.c:1574:31: note: 'wh_ri' was declared here
 1574 |     int i, j, k, n_ir, r_ind, wh_ri, u_, LL_negInf;
      |                               ^~~~~
In file included from BAFT_DPscr_Updates.c:16:
D:/RCompile/recent/R-4.3.3/include/Rmath.h: In function 'BAFT_DPscr_update_gamma':
D:/RCompile/recent/R-4.3.3/include/Rmath.h:230:25: warning: 'sd3' may be used uninitialized [-Wmaybe-uninitialized]
  230 | #define dnorm4          Rf_dnorm4
      |                         ^~~~~~~~~
BAFT_DPscr_Updates.c:1962:31: note: 'sd3' was declared here
 1962 |     double mean3, mean3_prop, sd3;
      |                               ^~~
D:/RCompile/recent/R-4.3.3/include/Rmath.h:230:25: warning: 'mean3_prop' may be used uninitialized [-Wmaybe-uninitialized]
  230 | #define dnorm4          Rf_dnorm4
      |                         ^~~~~~~~~
BAFT_DPscr_Updates.c:1962:19: note: 'mean3_prop' was declared here
 1962 |     double mean3, mean3_prop, sd3;
      |                   ^~~~~~~~~~
D:/RCompile/recent/R-4.3.3/include/Rmath.h:230:25: warning: 'mean3' may be used uninitialized [-Wmaybe-uninitialized]
  230 | #define dnorm4          Rf_dnorm4
      |                         ^~~~~~~~~
BAFT_DPscr_Updates.c:1962:12: note: 'mean3' was declared here
 1962 |     double mean3, mean3_prop, sd3;
      |            ^~~~~
BAFT_DPscr_Updates.c:2020:32: warning: 'ii3' may be used uninitialized [-Wmaybe-uninitialized]
 2020 |                 mean3 = eta3 + gsl_vector_get(mu3_all, ii3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:1956:29: note: 'ii3' was declared here
 1956 |     int i, uu, k, ii1, ii2, ii3;
      |                             ^~~
BAFT_DPscr_Updates.c:2005:24: warning: 'ii2' may be used uninitialized [-Wmaybe-uninitialized]
 2005 |         mean2 = eta2 + gsl_vector_get(mu2_all, ii2);
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:1956:24: note: 'ii2' was declared here
 1956 |     int i, uu, k, ii1, ii2, ii3;
      |                        ^~~
BAFT_DPscr_Updates.c:2001:24: warning: 'ii1' may be used uninitialized [-Wmaybe-uninitialized]
 2001 |         mean1 = eta1 + gsl_vector_get(mu1_all, ii1);
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:1956:19: note: 'ii1' was declared here
 1956 |     int i, uu, k, ii1, ii2, ii3;
      |                   ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BAFT_DPsurv.c -o BAFT_DPsurv.o
BAFT_DPsurv.c: In function 'BAFT_DPunimcmc':
BAFT_DPsurv.c:74:21: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
   74 |     gsl_matrix *X = gsl_matrix_calloc(*n, (nP));
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPsurv.c:69:9: note: 'nP' was declared here
   69 |     int nP;
      |         ^~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BAFT_DPsurv_Updates.c -o BAFT_DPsurv_Updates.o
BAFT_DPsurv_Updates.c: In function 'BAFT_DPsurv_update_mu_zeta':
BAFT_DPsurv_Updates.c:88:12: warning: 'wh_ri' may be used uninitialized [-Wmaybe-uninitialized]
   88 |         if(gsl_vector_get(rUniq_count, wh_ri) > 1) /* not singleton */
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPsurv_Updates.c:48:31: note: 'wh_ri' was declared here
   48 |     int i, j, k, n_ir, r_ind, wh_ri, u_, LL_negInf;
      |                               ^~~~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BAFT_LNscr.c -o BAFT_LNscr.o
BAFT_LNscr.c: In function 'BAFTscrmcmc':
BAFT_LNscr.c:101:22: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
  101 |     gsl_matrix *X1 = gsl_matrix_calloc(*n, (nP1));
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_LNscr.c:92:9: note: 'nP1' was declared here
   92 |     int nP1, nP2, nP3;
      |         ^~~
BAFT_LNscr.c:102:22: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
  102 |     gsl_matrix *X2 = gsl_matrix_calloc(*n, (nP2));
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_LNscr.c:92:14: note: 'nP2' was declared here
   92 |     int nP1, nP2, nP3;
      |              ^~~
BAFT_LNscr.c:103:22: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
  103 |     gsl_matrix *X3 = gsl_matrix_calloc(*n, (nP3));
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_LNscr.c:92:19: note: 'nP3' was declared here
   92 |     int nP1, nP2, nP3;
      |                   ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BAFT_LNscr_Updates.c -o BAFT_LNscr_Updates.o
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BAFT_LNsurv.c -o BAFT_LNsurv.o
BAFT_LNsurv.c: In function 'BAFTunimcmc':
BAFT_LNsurv.c:70:21: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
   70 |     gsl_matrix *X = gsl_matrix_calloc(*n, (nP));
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_LNsurv.c:65:9: note: 'nP' was declared here
   65 |     int nP;
      |         ^~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BAFT_LNsurv_Updates.c -o BAFT_LNsurv_Updates.o
BAFT_LNsurv_Updates.c: In function 'BAFT_LNsurv_update_beta0':
BAFT_LNsurv_Updates.c:140:74: warning: variable 'logprior_prop' set but not used [-Wunused-but-set-variable]
  140 |     double eta, eta_prop, loglh, loglh_prop, logR, beta0_prop, logprior, logprior_prop;
      |                                                                          ^~~~~~~~~~~~~
BAFT_LNsurv_Updates.c:140:64: warning: variable 'logprior' set but not used [-Wunused-but-set-variable]
  140 |     double eta, eta_prop, loglh, loglh_prop, logR, beta0_prop, logprior, logprior_prop;
      |                                                                ^~~~~~~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeDpCorScr.c -o BpeDpCorScr.o
BpeDpCorScr.c: In function 'BpeDpCorScrmcmc':
BpeDpCorScr.c:127:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
  127 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScr.c:118:9: note: 'nP1' was declared here
  118 |     int nP1, nP2, nP3;
      |         ^~~
BpeDpCorScr.c:128:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
  128 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScr.c:118:14: note: 'nP2' was declared here
  118 |     int nP1, nP2, nP3;
      |              ^~~
BpeDpCorScr.c:129:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
  129 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScr.c:118:19: note: 'nP3' was declared here
  118 |     int nP1, nP2, nP3;
      |                   ^~~
BpeDpCorScr.c:614:98: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
  614 |         if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2+pDI3) move = 18;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScr.c:483:96: note: 'pDI3' was declared here
  483 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
      |                                                                                                ^~~~
BpeDpCorScr.c:613:93: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
  613 |         if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2) move = 17;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScr.c:483:90: note: 'pDI2' was declared here
  483 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
      |                                                                                          ^~~~
BpeDpCorScr.c:612:88: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
  612 |         if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1) move = 16;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScr.c:483:84: note: 'pDI1' was declared here
  483 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
      |                                                                                    ^~~~
BpeDpCorScr.c:573:61: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
  573 |         double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScr.c:483:78: note: 'pBI3' was declared here
  483 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
      |                                                                              ^~~~
BpeDpCorScr.c:573:54: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
  573 |         double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScr.c:483:72: note: 'pBI2' was declared here
  483 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
      |                                                                        ^~~~
BpeDpCorScr.c:573:47: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
  573 |         double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
      |                           ~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScr.c:483:66: note: 'pBI1' was declared here
  483 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
      |                                                                  ^~~~
BpeDpCorScr.c:1041:24: warning: 'theta_mean' may be used uninitialized [-Wmaybe-uninitialized]
 1041 |             theta_mean = ((double) StoreInx - 1) * theta_mean;
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScr.c:477:12: note: 'theta_mean' was declared here
  477 |     double theta_mean;
      |            ^~~~~~~~~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeDpCorScrSM.c -o BpeDpCorScrSM.o
BpeDpCorScrSM.c: In function 'BpeDpCorScrSMmcmc':
BpeDpCorScrSM.c:128:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
  128 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScrSM.c:119:9: note: 'nP1' was declared here
  119 |     int nP1, nP2, nP3;
      |         ^~~
BpeDpCorScrSM.c:129:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
  129 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScrSM.c:119:14: note: 'nP2' was declared here
  119 |     int nP1, nP2, nP3;
      |              ^~~
BpeDpCorScrSM.c:130:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
  130 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScrSM.c:119:19: note: 'nP3' was declared here
  119 |     int nP1, nP2, nP3;
      |                   ^~~
BpeDpCorScrSM.c:620:98: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
  620 |         if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2+pDI3) move = 18;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScrSM.c:489:96: note: 'pDI3' was declared here
  489 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
      |                                                                                                ^~~~
BpeDpCorScrSM.c:619:93: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
  619 |         if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2) move = 17;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScrSM.c:489:90: note: 'pDI2' was declared here
  489 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
      |                                                                                          ^~~~
BpeDpCorScrSM.c:618:88: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
  618 |         if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1) move = 16;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScrSM.c:489:84: note: 'pDI1' was declared here
  489 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
      |                                                                                    ^~~~
BpeDpCorScrSM.c:579:61: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
  579 |         double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScrSM.c:489:78: note: 'pBI3' was declared here
  489 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
      |                                                                              ^~~~
BpeDpCorScrSM.c:579:54: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
  579 |         double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScrSM.c:489:72: note: 'pBI2' was declared here
  489 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
      |                                                                        ^~~~
BpeDpCorScrSM.c:579:47: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
  579 |         double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
      |                           ~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScrSM.c:489:66: note: 'pBI1' was declared here
  489 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
      |                                                                  ^~~~
BpeDpCorScrSM.c:1055:24: warning: 'theta_mean' may be used uninitialized [-Wmaybe-uninitialized]
 1055 |             theta_mean = ((double) StoreInx - 1) * theta_mean;
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScrSM.c:482:13: note: 'theta_mean' was declared here
  482 |      double theta_mean;
      |             ^~~~~~~~~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeDpCorScrSM_Updates.c -o BpeDpCorScrSM_Updates.o
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH1':
BpeDpCorScrSM_Updates.c:507:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  507 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH2':
BpeDpCorScrSM_Updates.c:734:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  734 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH3':
BpeDpCorScrSM_Updates.c:948:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  948 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH1':
BpeDpCorScrSM_Updates.c:567:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
  567 |             inc = - gam * Del * exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i)+gsl_vector_get(V1, jj));
      |                   ~~~~~~^~~~~
BpeDpCorScrSM_Updates.c:498:27: note: 'Del' was declared here
  498 |     double D1, D2, logLH, Del, inc, gam;
      |                           ^~~
BpeDpCorScrSM_Updates.c:577:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
  577 |     D1      += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScrSM_Updates.c:507:12: note: 'nu_lam' was declared here
  507 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH2':
BpeDpCorScrSM_Updates.c:793:35: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
  793 |             inc = - pow(gam, nu2) * Del * exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i)+gsl_vector_get(V2, jj));
      |                   ~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScrSM_Updates.c:725:27: note: 'Del' was declared here
  725 |     double D1, D2, logLH, Del, inc, gam;
      |                           ^~~
BpeDpCorScrSM_Updates.c:803:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
  803 |     D1      += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScrSM_Updates.c:734:12: note: 'nu_lam' was declared here
  734 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH3':
BpeDpCorScrSM_Updates.c:1008:35: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 1008 |             inc = - pow(gam, nu3) * Del * exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i)+gsl_vector_get(V3, jj));
      |                   ~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScrSM_Updates.c:939:27: note: 'Del' was declared here
  939 |     double D1, D2, logLH, Del, inc, gam;
      |                           ^~~
BpeDpCorScrSM_Updates.c:1016:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
 1016 |     D1      += -1/(sigSq_lam3 * gsl_matrix_get(Q3, j, j))*(gsl_vector_get(lambda3, j)-nu_lam);
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScrSM_Updates.c:948:12: note: 'nu_lam' was declared here
  948 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateDI1':
BpeDpCorScrSM_Updates.c:1833:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 1833 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i)+gsl_vector_get(V1, jj));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScrSM_Updates.c:1751:31: note: 'Del' was declared here
 1751 |     double logLH, logLH_prop, Del;
      |                               ^~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateDI2':
BpeDpCorScrSM_Updates.c:2422:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 2422 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i)+gsl_vector_get(V2, jj));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScrSM_Updates.c:2339:31: note: 'Del' was declared here
 2339 |     double logLH, logLH_prop, Del;
      |                               ^~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateDI3':
BpeDpCorScrSM_Updates.c:2998:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 2998 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i)+gsl_vector_get(V3, jj));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScrSM_Updates.c:2917:31: note: 'Del' was declared here
 2917 |     double logLH, logLH_prop, Del;
      |                               ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeDpCorScr_Updates.c -o BpeDpCorScr_Updates.o
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH1':
BpeDpCorScr_Updates.c:514:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  514 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH2':
BpeDpCorScr_Updates.c:746:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  746 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH3':
BpeDpCorScr_Updates.c:965:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  965 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH1':
BpeDpCorScr_Updates.c:577:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
  577 |             inc = - gam * Del * exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i)+gsl_vector_get(V1, jj));
      |                   ~~~~~~^~~~~
BpeDpCorScr_Updates.c:505:27: note: 'Del' was declared here
  505 |     double D1, D2, logLH, Del, inc, gam;
      |                           ^~~
BpeDpCorScr_Updates.c:587:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
  587 |     D1      += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScr_Updates.c:514:12: note: 'nu_lam' was declared here
  514 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH2':
BpeDpCorScr_Updates.c:804:35: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
  804 |             inc = - pow(gam, nu2) * Del * exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i)+gsl_vector_get(V2, jj));
      |                   ~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScr_Updates.c:737:27: note: 'Del' was declared here
  737 |     double D1, D2, logLH, Del, inc, gam;
      |                           ^~~
BpeDpCorScr_Updates.c:814:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
  814 |     D1      += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScr_Updates.c:746:12: note: 'nu_lam' was declared here
  746 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH3':
BpeDpCorScr_Updates.c:1026:35: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 1026 |             inc = - pow(gam, nu3) * Del * exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i)+gsl_vector_get(V3, jj));
      |                   ~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScr_Updates.c:956:27: note: 'Del' was declared here
  956 |     double D1, D2, logLH, Del, inc, gam;
      |                           ^~~
BpeDpCorScr_Updates.c:1034:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
 1034 |     D1      += -1/(sigSq_lam3 * gsl_matrix_get(Q3, j, j))*(gsl_vector_get(lambda3, j)-nu_lam);
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScr_Updates.c:965:12: note: 'nu_lam' was declared here
  965 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateDI1':
BpeDpCorScr_Updates.c:1844:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 1844 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i)+gsl_vector_get(V1, jj));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScr_Updates.c:1763:31: note: 'Del' was declared here
 1763 |     double logLH, logLH_prop, Del;
      |                               ^~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateDI2':
BpeDpCorScr_Updates.c:2436:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 2436 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i)+gsl_vector_get(V2, jj));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScr_Updates.c:2352:31: note: 'Del' was declared here
 2352 |     double logLH, logLH_prop, Del;
      |                               ^~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateDI3':
BpeDpCorScr_Updates.c:3021:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 3021 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i)+gsl_vector_get(V3, jj));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScr_Updates.c:2939:31: note: 'Del' was declared here
 2939 |     double logLH, logLH_prop, Del;
      |                               ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeDpCorSurv.c -o BpeDpCorSurv.o
BpeDpCorSurv.c: In function 'BpeDpCorSurvmcmc':
BpeDpCorSurv.c:233:37: warning: variable 'pCP' set but not used [-Wunused-but-set-variable]
  233 |     double pRP, pBH, pSP, pBI, pDI, pCP, choice;
      |                                     ^~~
BpeDpCorSurv.c:95:31: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
   95 |     gsl_matrix *survCov     = gsl_matrix_calloc(*n, nP);
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorSurv.c:90:9: note: 'nP' was declared here
   90 |     int nP;
      |         ^~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeDpCorSurv_Updates.c -o BpeDpCorSurv_Updates.o
BpeDpCorSurv_Updates.c: In function 'BpeDpCorSurv_updateBH':
BpeDpCorSurv_Updates.c:186:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  186 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeDpCorSurv_Updates.c: In function 'BpeDpCorSurv_updateCP':
BpeDpCorSurv_Updates.c:1261:18: warning: variable 'mu_temp' set but not used [-Wunused-but-set-variable]
 1261 |     double logR, mu_temp, zeta_temp;
      |                  ^~~~~~~
BpeDpCorSurv_Updates.c: In function 'BpeDpCorSurv_updateBH':
BpeDpCorSurv_Updates.c:244:19: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
  244 |             inc = - Del * exp(gsl_vector_get(lambda, j))*exp(gsl_vector_get(xbeta, i)+gsl_vector_get(V, jj));
      |                   ^~~~~
BpeDpCorSurv_Updates.c:177:27: note: 'Del' was declared here
  177 |     double D1, D2, logLH, Del, inc;
      |                           ^~~
BpeDpCorSurv_Updates.c:254:83: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
  254 |     D1      += -1/(sigSq_lam * gsl_matrix_get(Q, j, j))*(gsl_vector_get(lambda, j)-nu_lam);
      |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorSurv_Updates.c:186:12: note: 'nu_lam' was declared here
  186 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeDpCorSurv_Updates.c: In function 'BpeDpCorSurv_updateDI':
BpeDpCorSurv_Updates.c:812:28: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
  812 |                 logLH   += - Del*exp(gsl_vector_get(lambda, j))*exp(gsl_vector_get(xbeta, i)+gsl_vector_get(V, jj));
      |                            ^~~~~
BpeDpCorSurv_Updates.c:731:31: note: 'Del' was declared here
  731 |     double logLH, logLH_prop, Del;
      |                               ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeMvnCorScr.c -o BpeMvnCorScr.o
BpeMvnCorScr.c: In function 'BpeMvnCorScrmcmc':
BpeMvnCorScr.c:108:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
  108 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScr.c:99:9: note: 'nP1' was declared here
   99 |     int nP1, nP2, nP3;
      |         ^~~
BpeMvnCorScr.c:109:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
  109 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScr.c:99:14: note: 'nP2' was declared here
   99 |     int nP1, nP2, nP3;
      |              ^~~
BpeMvnCorScr.c:110:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
  110 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScr.c:99:19: note: 'nP3' was declared here
   99 |     int nP1, nP2, nP3;
      |                   ^~~
BpeMvnCorScr.c:551:98: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
  551 |         if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2+pDI3) move = 18;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScr.c:418:96: note: 'pDI3' was declared here
  418 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
      |                                                                                                ^~~~
BpeMvnCorScr.c:550:93: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
  550 |         if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2) move = 17;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScr.c:418:90: note: 'pDI2' was declared here
  418 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
      |                                                                                          ^~~~
BpeMvnCorScr.c:549:88: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
  549 |         if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1) move = 16;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScr.c:418:84: note: 'pDI1' was declared here
  418 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
      |                                                                                    ^~~~
BpeMvnCorScr.c:506:55: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
  506 |         double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScr.c:418:78: note: 'pBI3' was declared here
  418 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
      |                                                                              ^~~~
BpeMvnCorScr.c:506:48: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
  506 |         double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
      |                           ~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScr.c:418:72: note: 'pBI2' was declared here
  418 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
      |                                                                        ^~~~
BpeMvnCorScr.c:506:41: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
  506 |         double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
      |                           ~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScr.c:418:66: note: 'pBI1' was declared here
  418 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
      |                                                                  ^~~~
BpeMvnCorScr.c:1003:24: warning: 'theta_mean' may be used uninitialized [-Wmaybe-uninitialized]
 1003 |             theta_mean = ((double) StoreInx - 1) * theta_mean;
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScr.c:413:12: note: 'theta_mean' was declared here
  413 |     double theta_mean;
      |            ^~~~~~~~~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeMvnCorScrSM.c -o BpeMvnCorScrSM.o
BpeMvnCorScrSM.c: In function 'BpeMvnCorScrSMmcmc':
BpeMvnCorScrSM.c:109:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
  109 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScrSM.c:100:9: note: 'nP1' was declared here
  100 |     int nP1, nP2, nP3;
      |         ^~~
BpeMvnCorScrSM.c:110:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
  110 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScrSM.c:100:14: note: 'nP2' was declared here
  100 |     int nP1, nP2, nP3;
      |              ^~~
BpeMvnCorScrSM.c:111:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
  111 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScrSM.c:100:19: note: 'nP3' was declared here
  100 |     int nP1, nP2, nP3;
      |                   ^~~
BpeMvnCorScrSM.c:601:98: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
  601 |         if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2+pDI3) move = 18;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScrSM.c:456:96: note: 'pDI3' was declared here
  456 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
      |                                                                                                ^~~~
BpeMvnCorScrSM.c:600:93: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
  600 |         if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2) move = 17;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScrSM.c:456:90: note: 'pDI2' was declared here
  456 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
      |                                                                                          ^~~~
BpeMvnCorScrSM.c:599:88: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
  599 |         if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1) move = 16;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScrSM.c:456:84: note: 'pDI1' was declared here
  456 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
      |                                                                                    ^~~~
BpeMvnCorScrSM.c:556:55: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
  556 |         double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScrSM.c:456:78: note: 'pBI3' was declared here
  456 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
      |                                                                              ^~~~
BpeMvnCorScrSM.c:556:48: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
  556 |         double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
      |                           ~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScrSM.c:456:72: note: 'pBI2' was declared here
  456 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
      |                                                                        ^~~~
BpeMvnCorScrSM.c:556:41: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
  556 |         double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
      |                           ~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScrSM.c:456:66: note: 'pBI1' was declared here
  456 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
      |                                                                  ^~~~
BpeMvnCorScrSM.c:1058:24: warning: 'theta_mean' may be used uninitialized [-Wmaybe-uninitialized]
 1058 |             theta_mean = ((double) StoreInx - 1) * theta_mean;
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScrSM.c:446:12: note: 'theta_mean' was declared here
  446 |     double theta_mean;
      |            ^~~~~~~~~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeMvnCorScrSM_Updates.c -o BpeMvnCorScrSM_Updates.o
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH1':
BpeMvnCorScrSM_Updates.c:503:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  503 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH2':
BpeMvnCorScrSM_Updates.c:731:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  731 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH3':
BpeMvnCorScrSM_Updates.c:954:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  954 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH1':
BpeMvnCorScrSM_Updates.c:563:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
  563 |             inc = - gam * Del * exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i)+gsl_vector_get(V1, jj));
      |                   ~~~~~~^~~~~
BpeMvnCorScrSM_Updates.c:494:27: note: 'Del' was declared here
  494 |     double D1, D2, logLH, Del, inc, gam;
      |                           ^~~
BpeMvnCorScrSM_Updates.c:573:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
  573 |     D1      += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScrSM_Updates.c:503:12: note: 'nu_lam' was declared here
  503 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH2':
BpeMvnCorScrSM_Updates.c:792:35: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
  792 |             inc = - pow(gam, nu2) * Del * exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i)+gsl_vector_get(V2, jj));
      |                   ~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScrSM_Updates.c:722:27: note: 'Del' was declared here
  722 |     double D1, D2, logLH, Del, inc, gam;
      |                           ^~~
BpeMvnCorScrSM_Updates.c:802:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
  802 |     D1      += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScrSM_Updates.c:731:12: note: 'nu_lam' was declared here
  731 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH3':
BpeMvnCorScrSM_Updates.c:1014:35: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 1014 |             inc = - pow(gam, nu3) * Del * exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i)+gsl_vector_get(V3, jj));
      |                   ~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScrSM_Updates.c:945:27: note: 'Del' was declared here
  945 |     double D1, D2, logLH, Del, inc, gam;
      |                           ^~~
BpeMvnCorScrSM_Updates.c:1023:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
 1023 |     D1      += -1/(sigSq_lam3 * gsl_matrix_get(Q3, j, j))*(gsl_vector_get(lambda3, j)-nu_lam);
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScrSM_Updates.c:954:12: note: 'nu_lam' was declared here
  954 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateDI1':
BpeMvnCorScrSM_Updates.c:1833:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 1833 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i)+gsl_vector_get(V1, jj));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScrSM_Updates.c:1748:31: note: 'Del' was declared here
 1748 |     double logLH, logLH_prop, Del;
      |                               ^~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateDI2':
BpeMvnCorScrSM_Updates.c:2425:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 2425 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i)+gsl_vector_get(V2, jj));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScrSM_Updates.c:2342:31: note: 'Del' was declared here
 2342 |     double logLH, logLH_prop, Del;
      |                               ^~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateDI3':
BpeMvnCorScrSM_Updates.c:2996:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 2996 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i)+gsl_vector_get(V3, jj));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScrSM_Updates.c:2915:31: note: 'Del' was declared here
 2915 |     double logLH, logLH_prop, Del;
      |                               ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeMvnCorScr_Updates.c -o BpeMvnCorScr_Updates.o
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH1':
BpeMvnCorScr_Updates.c:503:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  503 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH2':
BpeMvnCorScr_Updates.c:732:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  732 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH3':
BpeMvnCorScr_Updates.c:955:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  955 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH1':
BpeMvnCorScr_Updates.c:563:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
  563 |             inc = - gam * Del * exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i)+gsl_vector_get(V1, jj));
      |                   ~~~~~~^~~~~
BpeMvnCorScr_Updates.c:494:27: note: 'Del' was declared here
  494 |     double D1, D2, logLH, Del, inc, gam;
      |                           ^~~
BpeMvnCorScr_Updates.c:573:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
  573 |     D1      += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScr_Updates.c:503:12: note: 'nu_lam' was declared here
  503 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH2':
BpeMvnCorScr_Updates.c:793:35: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
  793 |             inc = - pow(gam, nu2) * Del * exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i)+gsl_vector_get(V2, jj));
      |                   ~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScr_Updates.c:723:27: note: 'Del' was declared here
  723 |     double D1, D2, logLH, Del, inc, gam;
      |                           ^~~
BpeMvnCorScr_Updates.c:803:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
  803 |     D1      += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScr_Updates.c:732:12: note: 'nu_lam' was declared here
  732 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH3':
BpeMvnCorScr_Updates.c:1015:35: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 1015 |             inc = - pow(gam, nu3) * Del * exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i)+gsl_vector_get(V3, jj));
      |                   ~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScr_Updates.c:946:27: note: 'Del' was declared here
  946 |     double D1, D2, logLH, Del, inc, gam;
      |                           ^~~
BpeMvnCorScr_Updates.c:1024:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
 1024 |     D1      += -1/(sigSq_lam3 * gsl_matrix_get(Q3, j, j))*(gsl_vector_get(lambda3, j)-nu_lam);
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScr_Updates.c:955:12: note: 'nu_lam' was declared here
  955 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateDI1':
BpeMvnCorScr_Updates.c:1850:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 1850 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i)+gsl_vector_get(V1, jj));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScr_Updates.c:1764:31: note: 'Del' was declared here
 1764 |     double logLH, logLH_prop, Del;
      |                               ^~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateDI2':
BpeMvnCorScr_Updates.c:2461:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 2461 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i)+gsl_vector_get(V2, jj));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScr_Updates.c:2375:31: note: 'Del' was declared here
 2375 |     double logLH, logLH_prop, Del;
      |                               ^~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateDI3':
BpeMvnCorScr_Updates.c:3058:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 3058 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i)+gsl_vector_get(V3, jj));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScr_Updates.c:2969:31: note: 'Del' was declared here
 2969 |     double logLH, logLH_prop, Del;
      |                               ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeMvnCorSurv.c -o BpeMvnCorSurv.o
BpeMvnCorSurv.c: In function 'BpeMvnCorSurvmcmc':
BpeMvnCorSurv.c:201:42: warning: variable 'pVP' set but not used [-Wunused-but-set-variable]
  201 |     double pRP, pBH, pSP, pBI, pDI, pCP, pVP, choice;
      |                                          ^~~
BpeMvnCorSurv.c:78:31: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
   78 |     gsl_matrix *survCov     = gsl_matrix_calloc(*n, nP);
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorSurv.c:73:9: note: 'nP' was declared here
   73 |     int nP;
      |         ^~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeMvnCorSurv_Updates.c -o BpeMvnCorSurv_Updates.o
BpeMvnCorSurv_Updates.c: In function 'BpeMvnCorSurv_updateBH':
BpeMvnCorSurv_Updates.c:181:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  181 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeMvnCorSurv_Updates.c:239:19: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
  239 |             inc = - Del * exp(gsl_vector_get(lambda, j))*exp(gsl_vector_get(xbeta, i)+gsl_vector_get(V, jj));
      |                   ^~~~~
BpeMvnCorSurv_Updates.c:172:27: note: 'Del' was declared here
  172 |     double D1, D2, logLH, Del, inc;
      |                           ^~~
BpeMvnCorSurv_Updates.c:249:83: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
  249 |     D1      += -1/(sigSq_lam * gsl_matrix_get(Q, j, j))*(gsl_vector_get(lambda, j)-nu_lam);
      |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorSurv_Updates.c:181:12: note: 'nu_lam' was declared here
  181 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeMvnCorSurv_Updates.c: In function 'BpeMvnCorSurv_updateDI':
BpeMvnCorSurv_Updates.c:822:28: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
  822 |                 logLH   += - Del*exp(gsl_vector_get(lambda, j))*exp(gsl_vector_get(xbeta, i)+gsl_vector_get(V, jj));
      |                            ^~~~~
BpeMvnCorSurv_Updates.c:740:31: note: 'Del' was declared here
  740 |     double logLH, logLH_prop, Del;
      |                               ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeScr.c -o BpeScr.o
BpeScr.c: In function 'BpeScrmcmc':
BpeScr.c:91:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
   91 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScr.c:82:9: note: 'nP1' was declared here
   82 |     int nP1, nP2, nP3;
      |         ^~~
BpeScr.c:92:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
   92 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScr.c:82:14: note: 'nP2' was declared here
   82 |     int nP1, nP2, nP3;
      |              ^~~
BpeScr.c:93:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
   93 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScr.c:82:19: note: 'nP3' was declared here
   82 |     int nP1, nP2, nP3;
      |                   ^~~
BpeScr.c:398:70: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
  398 |         double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
      |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
BpeScr.c:316:96: note: 'pDI3' was declared here
  316 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
      |                                                                                                ^~~~
BpeScr.c:432:93: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
  432 |         if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2) move = 17;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScr.c:316:90: note: 'pDI2' was declared here
  316 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
      |                                                                                          ^~~~
BpeScr.c:431:88: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
  431 |         if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1) move = 16;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScr.c:316:84: note: 'pDI1' was declared here
  316 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
      |                                                                                    ^~~~
BpeScr.c:398:49: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
  398 |         double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
      |                           ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeScr.c:316:78: note: 'pBI3' was declared here
  316 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
      |                                                                              ^~~~
BpeScr.c:398:42: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
  398 |         double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
      |                           ~~~~~~~~~~~~~~~^~~~~~
BpeScr.c:316:72: note: 'pBI2' was declared here
  316 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
      |                                                                        ^~~~
BpeScr.c:398:35: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
  398 |         double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
      |                           ~~~~~~~~^~~~~~
BpeScr.c:316:66: note: 'pBI1' was declared here
  316 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
      |                                                                  ^~~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeScrSM.c -o BpeScrSM.o
BpeScrSM.c: In function 'BpeScrSMmcmc':
BpeScrSM.c:92:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
   92 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScrSM.c:83:9: note: 'nP1' was declared here
   83 |     int nP1, nP2, nP3;
      |         ^~~
BpeScrSM.c:93:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
   93 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScrSM.c:83:14: note: 'nP2' was declared here
   83 |     int nP1, nP2, nP3;
      |              ^~~
BpeScrSM.c:94:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
   94 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScrSM.c:83:19: note: 'nP3' was declared here
   83 |     int nP1, nP2, nP3;
      |                   ^~~
BpeScrSM.c:408:70: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
  408 |         double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
      |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
BpeScrSM.c:326:96: note: 'pDI3' was declared here
  326 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
      |                                                                                                ^~~~
BpeScrSM.c:442:93: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
  442 |         if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2) move = 17;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScrSM.c:326:90: note: 'pDI2' was declared here
  326 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
      |                                                                                          ^~~~
BpeScrSM.c:441:88: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
  441 |         if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1) move = 16;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScrSM.c:326:84: note: 'pDI1' was declared here
  326 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
      |                                                                                    ^~~~
BpeScrSM.c:408:49: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
  408 |         double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
      |                           ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeScrSM.c:326:78: note: 'pBI3' was declared here
  326 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
      |                                                                              ^~~~
BpeScrSM.c:408:42: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
  408 |         double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
      |                           ~~~~~~~~~~~~~~~^~~~~~
BpeScrSM.c:326:72: note: 'pBI2' was declared here
  326 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
      |                                                                        ^~~~
BpeScrSM.c:408:35: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
  408 |         double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
      |                           ~~~~~~~~^~~~~~
BpeScrSM.c:326:66: note: 'pBI1' was declared here
  326 |     double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
      |                                                                  ^~~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeScrSM_Updates.c -o BpeScrSM_Updates.o
BpeScrSM_Updates.c: In function 'BscrSM_updateBH1':
BpeScrSM_Updates.c:519:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  519 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeScrSM_Updates.c: In function 'BscrSM_updateBH2':
BpeScrSM_Updates.c:728:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  728 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeScrSM_Updates.c: In function 'BscrSM_updateBH3':
BpeScrSM_Updates.c:949:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  949 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeScrSM_Updates.c: In function 'BscrSM_updateBH1':
BpeScrSM_Updates.c:578:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
  578 |             inc = - gam * Del * exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i));
      |                   ~~~~~~^~~~~
BpeScrSM_Updates.c:510:27: note: 'Del' was declared here
  510 |     double D1, D2, logLH, Del, inc, gam;
      |                           ^~~
BpeScrSM_Updates.c:588:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
  588 |     D1      += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeScrSM_Updates.c:519:12: note: 'nu_lam' was declared here
  519 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeScrSM_Updates.c: In function 'BscrSM_updateBH2':
BpeScrSM_Updates.c:785:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
  785 |             inc = - gam * Del * exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i));
      |                   ~~~~~~^~~~~
BpeScrSM_Updates.c:719:27: note: 'Del' was declared here
  719 |     double D1, D2, logLH, Del, inc, gam;
      |                           ^~~
BpeScrSM_Updates.c:795:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
  795 |     D1      += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeScrSM_Updates.c:728:12: note: 'nu_lam' was declared here
  728 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeScrSM_Updates.c: In function 'BscrSM_updateDI1':
BpeScrSM_Updates.c:1842:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 1842 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScrSM_Updates.c:1760:31: note: 'Del' was declared here
 1760 |     double logLH, logLH_prop, Del;
      |                               ^~~
BpeScrSM_Updates.c: In function 'BscrSM_updateDI2':
BpeScrSM_Updates.c:2380:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 2380 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScrSM_Updates.c:2298:31: note: 'Del' was declared here
 2298 |     double logLH, logLH_prop, Del;
      |                               ^~~
BpeScrSM_Updates.c: In function 'BscrSM_updateDI3':
BpeScrSM_Updates.c:2918:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 2918 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScrSM_Updates.c:2837:31: note: 'Del' was declared here
 2837 |     double logLH, logLH_prop, Del;
      |                               ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeScr_Updates.c -o BpeScr_Updates.o
BpeScr_Updates.c: In function 'Bscr_updateBH1':
BpeScr_Updates.c:520:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  520 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeScr_Updates.c: In function 'Bscr_updateBH2':
BpeScr_Updates.c:736:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  736 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeScr_Updates.c: In function 'Bscr_updateBH3':
BpeScr_Updates.c:958:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  958 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeScr_Updates.c: In function 'Bscr_updateBH1':
BpeScr_Updates.c:579:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
  579 |             inc = - gam * Del * exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i));
      |                   ~~~~~~^~~~~
BpeScr_Updates.c:511:27: note: 'Del' was declared here
  511 |     double D1, D2, logLH, Del, inc, gam;
      |                           ^~~
BpeScr_Updates.c:589:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
  589 |     D1      += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeScr_Updates.c:520:12: note: 'nu_lam' was declared here
  520 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeScr_Updates.c: In function 'Bscr_updateBH2':
BpeScr_Updates.c:794:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
  794 |             inc = - gam * Del * exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i));
      |                   ~~~~~~^~~~~
BpeScr_Updates.c:727:27: note: 'Del' was declared here
  727 |     double D1, D2, logLH, Del, inc, gam;
      |                           ^~~
BpeScr_Updates.c:804:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
  804 |     D1      += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeScr_Updates.c:736:12: note: 'nu_lam' was declared here
  736 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeScr_Updates.c: In function 'Bscr_updateBH3':
BpeScr_Updates.c:1017:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 1017 |             inc = - gam * Del * exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i));
      |                   ~~~~~~^~~~~
BpeScr_Updates.c:949:27: note: 'Del' was declared here
  949 |     double D1, D2, logLH, Del, inc, gam;
      |                           ^~~
BpeScr_Updates.c:1027:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
 1027 |     D1      += -1/(sigSq_lam3 * gsl_matrix_get(Q3, j, j))*(gsl_vector_get(lambda3, j)-nu_lam);
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeScr_Updates.c:958:12: note: 'nu_lam' was declared here
  958 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeScr_Updates.c: In function 'Bscr_updateDI1':
BpeScr_Updates.c:1863:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 1863 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScr_Updates.c:1779:31: note: 'Del' was declared here
 1779 |     double logLH, logLH_prop, Del;
      |                               ^~~
BpeScr_Updates.c: In function 'Bscr_updateDI2':
BpeScr_Updates.c:2423:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 2423 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScr_Updates.c:2340:31: note: 'Del' was declared here
 2340 |     double logLH, logLH_prop, Del;
      |                               ^~~
BpeScr_Updates.c: In function 'Bscr_updateDI3':
BpeScr_Updates.c:2964:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 2964 |                 logLH   += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i));
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScr_Updates.c:2883:31: note: 'Del' was declared here
 2883 |     double logLH, logLH_prop, Del;
      |                               ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeSurv.c -o BpeSurv.o
BpeSurv.c: In function 'BpeSurvmcmc':
BpeSurv.c:64:27: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
   64 |     gsl_matrix *survCov = gsl_matrix_calloc(*n, nP);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~
BpeSurv.c:59:9: note: 'nP' was declared here
   59 |     int nP;
      |         ^~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BpeSurv_Updates.c -o BpeSurv_Updates.o
BpeSurv_Updates.c: In function 'BpeSur_updateBH2':
BpeSurv_Updates.c:313:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  313 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeSurv_Updates.c: In function 'BpeSur_updateBH1':
BpeSurv_Updates.c:518:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
  518 |     double nu_lam, nu_lam_prop;
      |                    ^~~~~~~~~~~
BpeSurv_Updates.c: In function 'BpeSur_updateBH2':
BpeSurv_Updates.c:366:19: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
  366 |             inc = - Del*exp(gsl_vector_get(lambda, j))*exp(gsl_vector_get(xbeta, i));
      |                   ^~~~~
BpeSurv_Updates.c:304:27: note: 'Del' was declared here
  304 |     double D1, D2, logLH, Del, inc;
      |                           ^~~
BpeSurv_Updates.c:374:83: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
  374 |     D1      += -1/(sigSq_lam * gsl_matrix_get(Q, j, j))*(gsl_vector_get(lambda, j)-nu_lam);
      |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeSurv_Updates.c:313:12: note: 'nu_lam' was declared here
  313 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeSurv_Updates.c: In function 'BpeSur_updateBH1':
BpeSurv_Updates.c:552:108: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
  552 |     D1      += gsl_vector_get(nEvent, j)-1/(sigSq_lam * gsl_matrix_get(Q, j, j))*(gsl_vector_get(lambda, j)-nu_lam);
      |                                                                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeSurv_Updates.c:518:12: note: 'nu_lam' was declared here
  518 |     double nu_lam, nu_lam_prop;
      |            ^~~~~~
BpeSurv_Updates.c: In function 'BpeSur_updateDI2':
BpeSurv_Updates.c:1362:28: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
 1362 |                 logLH   += - Del*exp(gsl_vector_get(lambda, j))*exp(gsl_vector_get(xbeta, i));
      |                            ^~~~~
BpeSurv_Updates.c:1283:31: note: 'Del' was declared here
 1283 |     double logLH, logLH_prop, Del;
      |                               ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibCorSurv.c -o BweibCorSurv.o
BweibCorSurv.c: In function 'BweibCorSurvmcmc':
BweibCorSurv.c:144:32: warning: variable 'pVP' set but not used [-Wunused-but-set-variable]
  144 |     double pRP, pSH, pSC, pCP, pVP, choice;
      |                                ^~~
BweibCorSurv.c:71:31: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
   71 |     gsl_matrix *survCov     = gsl_matrix_calloc(*n, nP);
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~~
BweibCorSurv.c:66:9: note: 'nP' was declared here
   66 |     int nP;
      |         ^~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibCorSurv_Updates.c -o BweibCorSurv_Updates.o
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibDpCorScr.c -o BweibDpCorScr.o
BweibDpCorScr.c: In function 'BweibDpCorScrmcmc':
BweibDpCorScr.c:118:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
  118 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:109:9: note: 'nP1' was declared here
  109 |     int nP1, nP2, nP3;
      |         ^~~
BweibDpCorScr.c:119:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
  119 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:109:14: note: 'nP2' was declared here
  109 |     int nP1, nP2, nP3;
      |              ^~~
BweibDpCorScr.c:120:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
  120 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:109:19: note: 'nP3' was declared here
  109 |     int nP1, nP2, nP3;
      |                   ^~~
BweibDpCorScr.c:745:24: warning: 'theta_mean' may be used uninitialized [-Wmaybe-uninitialized]
  745 |             theta_mean = ((double) StoreInx - 1) * theta_mean;
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:348:12: note: 'theta_mean' was declared here
  348 |     double theta_mean;
      |            ^~~~~~~~~~
BweibDpCorScr.c:741:25: warning: 'kappa3_mean' may be used uninitialized [-Wmaybe-uninitialized]
  741 |             kappa3_mean = ((double) StoreInx - 1) * kappa3_mean;
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:346:38: note: 'kappa3_mean' was declared here
  346 |     double kappa1_mean, kappa2_mean, kappa3_mean;
      |                                      ^~~~~~~~~~~
BweibDpCorScr.c:737:25: warning: 'kappa2_mean' may be used uninitialized [-Wmaybe-uninitialized]
  737 |             kappa2_mean = ((double) StoreInx - 1) * kappa2_mean;
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:346:25: note: 'kappa2_mean' was declared here
  346 |     double kappa1_mean, kappa2_mean, kappa3_mean;
      |                         ^~~~~~~~~~~
BweibDpCorScr.c:733:25: warning: 'kappa1_mean' may be used uninitialized [-Wmaybe-uninitialized]
  733 |             kappa1_mean = ((double) StoreInx - 1) * kappa1_mean;
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:346:12: note: 'kappa1_mean' was declared here
  346 |     double kappa1_mean, kappa2_mean, kappa3_mean;
      |            ^~~~~~~~~~~
BweibDpCorScr.c:729:25: warning: 'alpha3_mean' may be used uninitialized [-Wmaybe-uninitialized]
  729 |             alpha3_mean = ((double) StoreInx - 1) * alpha3_mean;
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:345:38: note: 'alpha3_mean' was declared here
  345 |     double alpha1_mean, alpha2_mean, alpha3_mean;
      |                                      ^~~~~~~~~~~
BweibDpCorScr.c:725:25: warning: 'alpha2_mean' may be used uninitialized [-Wmaybe-uninitialized]
  725 |             alpha2_mean = ((double) StoreInx - 1) * alpha2_mean;
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:345:25: note: 'alpha2_mean' was declared here
  345 |     double alpha1_mean, alpha2_mean, alpha3_mean;
      |                         ^~~~~~~~~~~
BweibDpCorScr.c:721:25: warning: 'alpha1_mean' may be used uninitialized [-Wmaybe-uninitialized]
  721 |             alpha1_mean = ((double) StoreInx - 1) * alpha1_mean;
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:345:12: note: 'alpha1_mean' was declared here
  345 |     double alpha1_mean, alpha2_mean, alpha3_mean;
      |            ^~~~~~~~~~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibDpCorScrSM.c -o BweibDpCorScrSM.o
BweibDpCorScrSM.c: In function 'BweibDpCorScrSMmcmc':
BweibDpCorScrSM.c:120:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
  120 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScrSM.c:111:9: note: 'nP1' was declared here
  111 |     int nP1, nP2, nP3;
      |         ^~~
BweibDpCorScrSM.c:121:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
  121 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScrSM.c:111:14: note: 'nP2' was declared here
  111 |     int nP1, nP2, nP3;
      |              ^~~
BweibDpCorScrSM.c:122:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
  122 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScrSM.c:111:19: note: 'nP3' was declared here
  111 |     int nP1, nP2, nP3;
      |                   ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibDpCorScrSM_Updates.c -o BweibDpCorScrSM_Updates.o
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibDpCorScr_Updates.c -o BweibDpCorScr_Updates.o
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibDpCorSurv.c -o BweibDpCorSurv.o
BweibDpCorSurv.c: In function 'BweibDpCorSurvmcmc':
BweibDpCorSurv.c:88:31: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
   88 |     gsl_matrix *survCov     = gsl_matrix_calloc(*n, nP);
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorSurv.c:83:9: note: 'nP' was declared here
   83 |     int nP;
      |         ^~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibDpCorSurv_Updates.c -o BweibDpCorSurv_Updates.o
BweibDpCorSurv_Updates.c: In function 'BweibDpCorSurv_updateCP':
BweibDpCorSurv_Updates.c:553:18: warning: variable 'mu_temp' set but not used [-Wunused-but-set-variable]
  553 |     double logR, mu_temp, zeta_temp;
      |                  ^~~~~~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibMvnCorScr.c -o BweibMvnCorScr.o
BweibMvnCorScr.c: In function 'BweibMvnCorScrmcmc':
BweibMvnCorScr.c:320:99: warning: variable 'pVP' set but not used [-Wunused-but-set-variable]
  320 |     double pRP1, pRP2, pRP3, pSH1, pSH2, pSH3, pSC1, pSC2, pSC3, pDP, pFP, pMP, pCP1, pCP2, pCP3, pVP, choice;
      |                                                                                                   ^~~
BweibMvnCorScr.c:102:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
  102 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScr.c:93:9: note: 'nP1' was declared here
   93 |     int nP1, nP2, nP3;
      |         ^~~
BweibMvnCorScr.c:103:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
  103 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScr.c:93:14: note: 'nP2' was declared here
   93 |     int nP1, nP2, nP3;
      |              ^~~
BweibMvnCorScr.c:104:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
  104 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScr.c:93:19: note: 'nP3' was declared here
   93 |     int nP1, nP2, nP3;
      |                   ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibMvnCorScrSM.c -o BweibMvnCorScrSM.o
BweibMvnCorScrSM.c: In function 'BweibMvnCorScrSMmcmc':
BweibMvnCorScrSM.c:335:99: warning: variable 'pVP' set but not used [-Wunused-but-set-variable]
  335 |     double pRP1, pRP2, pRP3, pSH1, pSH2, pSH3, pSC1, pSC2, pSC3, pDP, pFP, pMP, pCP1, pCP2, pCP3, pVP, choice;
      |                                                                                                   ^~~
BweibMvnCorScrSM.c:102:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
  102 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScrSM.c:93:9: note: 'nP1' was declared here
   93 |     int nP1, nP2, nP3;
      |         ^~~
BweibMvnCorScrSM.c:103:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
  103 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScrSM.c:93:14: note: 'nP2' was declared here
   93 |     int nP1, nP2, nP3;
      |              ^~~
BweibMvnCorScrSM.c:104:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
  104 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScrSM.c:93:19: note: 'nP3' was declared here
   93 |     int nP1, nP2, nP3;
      |                   ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibMvnCorScrSM_Updates.c -o BweibMvnCorScrSM_Updates.o
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibMvnCorScr_Updates.c -o BweibMvnCorScr_Updates.o
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibScr.c -o BweibScr.o
BweibScr.c: In function 'BweibScrmcmc':
BweibScr.c:231:71: warning: variable 'pFP' set but not used [-Wunused-but-set-variable]
  231 |     double pRP1, pRP2, pRP3, pSH1, pSH2, pSH3, pSC1, pSC2, pSC3, pDP, pFP, choice;
      |                                                                       ^~~
BweibScr.c:85:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
   85 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScr.c:76:9: note: 'nP1' was declared here
   76 |     int nP1, nP2, nP3;
      |         ^~~
BweibScr.c:86:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
   86 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScr.c:76:14: note: 'nP2' was declared here
   76 |     int nP1, nP2, nP3;
      |              ^~~
BweibScr.c:87:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
   87 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScr.c:76:19: note: 'nP3' was declared here
   76 |     int nP1, nP2, nP3;
      |                   ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibScrSM.c -o BweibScrSM.o
BweibScrSM.c: In function 'BweibScrSMmcmc':
BweibScrSM.c:237:71: warning: variable 'pFP' set but not used [-Wunused-but-set-variable]
  237 |     double pRP1, pRP2, pRP3, pSH1, pSH2, pSH3, pSC1, pSC2, pSC3, pDP, pFP, choice;
      |                                                                       ^~~
BweibScrSM.c:85:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
   85 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScrSM.c:76:9: note: 'nP1' was declared here
   76 |     int nP1, nP2, nP3;
      |         ^~~
BweibScrSM.c:86:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
   86 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScrSM.c:76:14: note: 'nP2' was declared here
   76 |     int nP1, nP2, nP3;
      |              ^~~
BweibScrSM.c:87:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
   87 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScrSM.c:76:19: note: 'nP3' was declared here
   76 |     int nP1, nP2, nP3;
      |                   ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibScrSM_Updates.c -o BweibScrSM_Updates.o
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibScr_Updates.c -o BweibScr_Updates.o
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibSurv.c -o BweibSurv.o
BweibSurv.c: In function 'BweibSurvmcmc':
BweibSurv.c:109:22: warning: variable 'pSC' set but not used [-Wunused-but-set-variable]
  109 |     double pRP, pSH, pSC, choice;
      |                      ^~~
BweibSurv.c:62:27: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
   62 |     gsl_matrix *survCov = gsl_matrix_calloc(*n, nP);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~
BweibSurv.c:57:9: note: 'nP' was declared here
   57 |     int nP;
      |         ^~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BweibSurv_Updates.c -o BweibSurv_Updates.o
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Utilities.c -o Utilities.o
Utilities.c: In function 'log_fg_BAFT_DP':
Utilities.c:6029:64: warning: variable 'temp' set but not used [-Wunused-but-set-variable]
 6029 |     double mu_k, sigSq_k, mixProb_den, val1, val2, log1, logk, temp;
      |                                                                ^~~~
Utilities.c:6029:58: warning: variable 'logk' set but not used [-Wunused-but-set-variable]
 6029 |     double mu_k, sigSq_k, mixProb_den, val1, val2, log1, logk, temp;
      |                                                          ^~~~
Utilities.c:6029:52: warning: variable 'log1' set but not used [-Wunused-but-set-variable]
 6029 |     double mu_k, sigSq_k, mixProb_den, val1, val2, log1, logk, temp;
      |                                                    ^~~~
Utilities.c: In function 'log_Jpdf_Upper_BAFT_LN':
Utilities.c:6382:35: warning: variable 'y2_temp' set but not used [-Wunused-but-set-variable]
 6382 |     double eta1, eta2, eta3, gam, y2_temp;
      |                                   ^~~~~~~
Utilities.c: In function 'c_multinom_sample':
Utilities.c:3487:5: warning: '<unknown>' may be used uninitialized [-Wmaybe-uninitialized]
 3487 |     gsl_ran_multinomial(rr, KK, 1, probK, samples);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from Utilities.c:14:
d:\rtools43\x86_64-w64-mingw32.static.posix\include\gsl\gsl_randist.h:154:6: note: by argument 4 of type 'const double[]' to 'gsl_ran_multinomial' declared here
  154 | void gsl_ran_multinomial (const gsl_rng * r, const size_t K,
      |      ^~~~~~~~~~~~~~~~~~~
Utilities.c:3494:12: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized]
 3494 |     return val;
      |            ^~~
Utilities.c:3476:13: note: 'val' was declared here
 3476 |     int ii, val;
      |             ^~~
Utilities.c: In function 'BweibMvnCorScr_logMLH_DIC':
Utilities.c:6630:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
 6630 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6621:9: note: 'nP1' was declared here
 6621 |     int nP1, nP2, nP3;
      |         ^~~
Utilities.c:6631:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
 6631 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6621:14: note: 'nP2' was declared here
 6621 |     int nP1, nP2, nP3;
      |              ^~~
Utilities.c:6632:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
 6632 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6621:19: note: 'nP3' was declared here
 6621 |     int nP1, nP2, nP3;
      |                   ^~~
Utilities.c: In function 'BweibMvnCorScrSM_logMLH_DIC':
Utilities.c:6813:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
 6813 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6804:9: note: 'nP1' was declared here
 6804 |     int nP1, nP2, nP3;
      |         ^~~
Utilities.c:6814:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
 6814 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6804:14: note: 'nP2' was declared here
 6804 |     int nP1, nP2, nP3;
      |              ^~~
Utilities.c:6815:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
 6815 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6804:19: note: 'nP3' was declared here
 6804 |     int nP1, nP2, nP3;
      |                   ^~~
Utilities.c: In function 'BpeMvnCorScr_logMLH_DIC':
Utilities.c:7364:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
 7364 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7355:9: note: 'nP1' was declared here
 7355 |     int nP1, nP2, nP3;
      |         ^~~
Utilities.c:7365:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
 7365 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7355:14: note: 'nP2' was declared here
 7355 |     int nP1, nP2, nP3;
      |              ^~~
Utilities.c:7366:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
 7366 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7355:19: note: 'nP3' was declared here
 7355 |     int nP1, nP2, nP3;
      |                   ^~~
Utilities.c: In function 'BpeMvnCorScrSM_logMLH_DIC':
Utilities.c:7595:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
 7595 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7586:9: note: 'nP1' was declared here
 7586 |     int nP1, nP2, nP3;
      |         ^~~
Utilities.c:7596:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
 7596 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7586:14: note: 'nP2' was declared here
 7586 |     int nP1, nP2, nP3;
      |              ^~~
Utilities.c:7597:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
 7597 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7586:19: note: 'nP3' was declared here
 7586 |     int nP1, nP2, nP3;
      |                   ^~~
Utilities.c: In function 'BweibScr_logMLH_DIC':
Utilities.c:8450:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
 8450 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8441:9: note: 'nP1' was declared here
 8441 |     int nP1, nP2, nP3;
      |         ^~~
Utilities.c:8451:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
 8451 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8441:14: note: 'nP2' was declared here
 8441 |     int nP1, nP2, nP3;
      |              ^~~
Utilities.c:8452:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
 8452 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8441:19: note: 'nP3' was declared here
 8441 |     int nP1, nP2, nP3;
      |                   ^~~
Utilities.c: In function 'BweibScrSM_logMLH_DIC':
Utilities.c:8619:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
 8619 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8610:9: note: 'nP1' was declared here
 8610 |     int nP1, nP2, nP3;
      |         ^~~
Utilities.c:8620:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
 8620 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8610:14: note: 'nP2' was declared here
 8610 |     int nP1, nP2, nP3;
      |              ^~~
Utilities.c:8621:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
 8621 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8610:19: note: 'nP3' was declared here
 8610 |     int nP1, nP2, nP3;
      |                   ^~~
Utilities.c: In function 'BpeScr_logMLH_DIC':
Utilities.c:9128:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
 9128 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9119:9: note: 'nP1' was declared here
 9119 |     int nP1, nP2, nP3;
      |         ^~~
Utilities.c:9129:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
 9129 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9119:14: note: 'nP2' was declared here
 9119 |     int nP1, nP2, nP3;
      |              ^~~
Utilities.c:9130:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
 9130 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9119:19: note: 'nP3' was declared here
 9119 |     int nP1, nP2, nP3;
      |                   ^~~
Utilities.c: In function 'BpeScrSM_logMLH_DIC':
Utilities.c:9709:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
 9709 |     gsl_matrix *survCov1     = gsl_matrix_calloc(*n, nP1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9700:9: note: 'nP1' was declared here
 9700 |     int nP1, nP2, nP3;
      |         ^~~
Utilities.c:9710:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
 9710 |     gsl_matrix *survCov2     = gsl_matrix_calloc(*n, nP2);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9700:14: note: 'nP2' was declared here
 9700 |     int nP1, nP2, nP3;
      |              ^~~
Utilities.c:9711:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
 9711 |     gsl_matrix *survCov3     = gsl_matrix_calloc(*n, nP3);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9700:19: note: 'nP3' was declared here
 9700 |     int nP1, nP2, nP3;
      |                   ^~~
gcc  -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG     -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
gcc -shared -s -static-libgcc -o SemiCompRisks.dll tmp.def BAFT_DPscr.o BAFT_DPscr_Updates.o BAFT_DPsurv.o BAFT_DPsurv_Updates.o BAFT_LNscr.o BAFT_LNscr_Updates.o BAFT_LNsurv.o BAFT_LNsurv_Updates.o BpeDpCorScr.o BpeDpCorScrSM.o BpeDpCorScrSM_Updates.o BpeDpCorScr_Updates.o BpeDpCorSurv.o BpeDpCorSurv_Updates.o BpeMvnCorScr.o BpeMvnCorScrSM.o BpeMvnCorScrSM_Updates.o BpeMvnCorScr_Updates.o BpeMvnCorSurv.o BpeMvnCorSurv_Updates.o BpeScr.o BpeScrSM.o BpeScrSM_Updates.o BpeScr_Updates.o BpeSurv.o BpeSurv_Updates.o BweibCorSurv.o BweibCorSurv_Updates.o BweibDpCorScr.o BweibDpCorScrSM.o BweibDpCorScrSM_Updates.o BweibDpCorScr_Updates.o BweibDpCorSurv.o BweibDpCorSurv_Updates.o BweibMvnCorScr.o BweibMvnCorScrSM.o BweibMvnCorScrSM_Updates.o BweibMvnCorScr_Updates.o BweibScr.o BweibScrSM.o BweibScrSM_Updates.o BweibScr_Updates.o BweibSurv.o BweibSurv_Updates.o Utilities.o registerDynamicSymbol.o -L/usr/local/lib -lgsl -lgslcblas -lm -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.3.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_08_01_50_00_8402/Rtmps3nLN1/R.INSTALL20d8050f9492b/SemiCompRisks/src'
make[1]: Entering directory '/d/temp/2024_12_08_01_50_00_8402/Rtmps3nLN1/R.INSTALL20d8050f9492b/SemiCompRisks/src'
make[1]: Leaving directory '/d/temp/2024_12_08_01_50_00_8402/Rtmps3nLN1/R.INSTALL20d8050f9492b/SemiCompRisks/src'
installing to d:/Rcompile/CRANpkg/lib/4.3/00LOCK-SemiCompRisks/00new/SemiCompRisks/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'SemiCompRisks' as SemiCompRisks_3.4.zip
* DONE (SemiCompRisks)