• using R version 4.4.3 (2025-02-28 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 13.3.0     GNU Fortran (GCC) 13.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'SIBER/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'SIBER' version '2.1.9'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'SIBER' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s] OK
• checking whether the package can be unloaded cleanly ... [2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s] OK
• checking loading without being on the library search path ... [2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s] OK
• checking Rd files ... [1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [6s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [252s] ERROR Error(s) in re-building vignettes: --- re-building 'Centroid-Vectors.Rmd' using rmarkdown --- finished re-building 'Centroid-Vectors.Rmd' --- re-building 'Customising-Plots-Manually.Rmd' using rmarkdown --- finished re-building 'Customising-Plots-Manually.Rmd' --- re-building 'Ellipse-Overlap.Rmd' using rmarkdown --- finished re-building 'Ellipse-Overlap.Rmd' --- re-building 'Introduction-to-SIBER.Rmd' using rmarkdown --- finished re-building 'Introduction-to-SIBER.Rmd' --- re-building 'Plot-SIA-ggplot2.Rmd' using rmarkdown --- finished re-building 'Plot-SIA-ggplot2.Rmd' --- re-building 'Plot-posterior-ellipses.Rmd' using rmarkdown --- finished re-building 'Plot-posterior-ellipses.Rmd' --- re-building 'Points-Inside-Outside-Ellipse.Rmd' using rmarkdown --- finished re-building 'Points-Inside-Outside-Ellipse.Rmd' --- re-building 'Test-convergence.Rmd' using rmarkdown --- finished re-building 'Test-convergence.Rmd' --- re-building 'kapow-example.Rmd' using rmarkdown Quitting from kapow-example.Rmd:90-131 [make-packs] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/purrr_error_indexed> Error in `purrr::map()`: ℹ In index: 1. ℹ With name: 11. Caused by error: ! `group_by_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `group_by()` instead. ℹ See vignette('programming') for more help --- Backtrace:      ▆   1. ├─purrr::map(...)   2. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)   3. │ ├─purrr:::with_indexed_errors(...)   4. │ │ └─base::withCallingHandlers(...)   5. │ ├─purrr:::call_with_cleanup(...)   6. │ └─SIBER (local) .f(.x[[i]], ...)   7. │ └─... %>% do(calcBoundaries(.data))   8. ├─dplyr::do(., calcBoundaries(.data))   9. └─dplyr::group_by_(., .dots = group)  10. └─dplyr:::lazy_defunct("group_by")  11. └─lifecycle::deprecate_stop(...)  12. └─lifecycle:::deprecate_stop0(msg) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'kapow-example.Rmd' failed with diagnostics: ℹ In index: 1. ℹ With name: 11. Caused by error: ! `group_by_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `group_by()` instead. ℹ See vignette('programming') for more help --- failed re-building 'kapow-example.Rmd' --- re-building 'siber-comparing-communities.Rmd' using rmarkdown --- finished re-building 'siber-comparing-communities.Rmd' --- re-building 'siber-comparing-populations.Rmd' using rmarkdown --- finished re-building 'siber-comparing-populations.Rmd' SUMMARY: processing the following file failed:   'kapow-example.Rmd' Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [21s] OK
• checking HTML version of manual ... [9s] OK
• DONE

Status: 1 ERROR